FMO02262.5prime Sequence
1198 bp (995 high quality bases) assembled on 2008-05-06
> FMO02262.5prime
CAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACGAACGCGAG
CTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGCCTGGACCA
GGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCTGCGCCTCT
GGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCAAGTGCAAT
GACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCCGGATTCGA
CTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGATGTCTCGC
CGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCCATCTGGAG
TACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAATGAGTTCGA
GGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGATCGTGAGAT
TCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACAAATTTGGC
TGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCCAAATCCTT
GGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGGATGCAGCG
AGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACCTCTTCAAG
TTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATTGGCGGTGG
GTTCCCTGGCAGCGATGACGTAAAGTTTGAGAAGATAGCCGAAAGTGTGA
ATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACATAATCGCC
GAACCAGGACGCTTCTTTGTGGCGGCAGCCTGCACCTTGGTTTGCAAGAT
CCACGCCAAGCGGGAGATCAGGACCGAGCTGGCAAACTGGACACCGTAAT
GTACTATCTGAATGACGGCGTCTATGAGTTCTTCACTGCATTCTGTACGA
CCATCAAGTGCTGATTGCAGAGCATATCTGGACATGCAGATCTTTGCCCA
CTAAGTCCTGATTTGGGGGTCAGTTGTGACGCCTAGAATAAGATTCGAGG
ACTGCACTTGCCCAACCTAAACGAGGGATCTTTGGGATCGACTGGGCGCC
TACCAATGCATGCAGTGCATTCATGGAATCAAGTTCGAACCTGTTACATC
AAGCCTAGCAGCTATCTAGAACTTATCGTATTTGGGCGCCGGGGCCAG
FMO02262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Odc1-RA | 1253 | CG8721-RA | 24..1123 | 5..1088 | 4965 | 97.8 | Plus |
| Odc2-RA | 1268 | CG8719-RA | 58..926 | 48..915 | 1440 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8005624..8005926 | 432..734 | 1500 | 99.7 | Plus |
| 2R | 25286936 | 2R | 8004847..8005122 | 5..280 | 1365 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8005982..8006226 | 733..975 | 1065 | 97.6 | Plus |
| 2R | 25286936 | 2R | 8005415..8005573 | 278..436 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 8007993..8008218 | 432..657 | 530 | 82.3 | Plus |
| 2R | 25286936 | 2R | 8007303..8007535 | 48..280 | 520 | 81.5 | Plus |
| 2R | 25286936 | 2R | 8007806..8007945 | 297..436 | 280 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:57 has no hits.
FMO02262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:11 Download gff for
FMO02262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8721-RA | 40..1144 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:19 Download gff for
FMO02262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Odc1-RA | 19..1123 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:34 Download gff for
FMO02262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Odc1-RA | 19..1123 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:34 Download gff for
FMO02262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8004842..8005120 | 1..278 | 98 | -> | Plus |
| 2R | 8005416..8005573 | 279..436 | 100 | -> | Plus |
| 2R | 8005629..8005926 | 437..734 | 100 | -> | Plus |
| 2R | 8005984..8006232 | 735..980 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:19 Download gff for
FMO02262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3892347..3892625 | 1..278 | 98 | -> | Plus |
| arm_2R | 3892921..3893078 | 279..436 | 100 | -> | Plus |
| arm_2R | 3893134..3893431 | 437..734 | 100 | -> | Plus |
| arm_2R | 3893489..3893737 | 735..980 | 97 | -> | Plus |
