FMO02263.5prime Sequence
1010 bp (1010 high quality bases) assembled on 2008-05-06
> FMO02263.5prime
CAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGACAAATAGTC
CTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGCTCCCCGTC
ATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCTCGCCCAGA
ACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATCCTTCGCCC
CAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCGGAGATCCA
GAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAGCTCCCTCA
ACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAACCAGAGGCC
GCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTAGAGAAGCA
GCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGACGGAGGAGC
GCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGGACAAGGCC
CGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGACGCGGCCAT
GAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACTGCGCAAGA
ATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGATCCGGGCCG
AGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAGGACGAGAT
TCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCAGCAGCAGG
CGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAAGGCTTGAAAGAG
GAACAGCGCCGGCAACTGGCCCAGGATGCCTGGTCGAAGTGGATGAGCAA
TGTGGACGCCAAGCCCAAGCCGGTGCCCCTCAATCAGGCATGGACTCACT
GCGAGGCACCATATCTCAACTCTATGTGAATCCCACTCCATGGATGGGTC
CAGTTAACAGACGCAAATGGCAAGCTTTCTAGACCATTCGTTGGCGCCGC
GGGCCCAGTA
FMO02263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7251-RB | 1243 | CG7251-RB | 124..1086 | 9..969 | 4720 | 99.5 | Plus |
| CG7251-RA | 1209 | CG7251-RA | 124..1086 | 9..969 | 4720 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5587272..5587915 | 969..328 | 3090 | 99.4 | Minus |
| 2L | 23513712 | 2L | 5587969..5588291 | 331..9 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 20:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 370..506 | 139 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 376..459 | 123 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 376..459 | 123 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 376..438 | 117 | 65.1 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 374..442 | 111 | 62.3 | Plus |
FMO02263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:12 Download gff for
FMO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-RA | 118..1086 | 1..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:28 Download gff for
FMO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-RA | 118..1086 | 1..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:44 Download gff for
FMO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-RA | 118..1086 | 1..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:44 Download gff for
FMO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5587272..5587913 | 330..969 | 99 | <- | Minus |
| 2L | 5587971..5588296 | 1..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:28 Download gff for
FMO02263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5587272..5587913 | 330..969 | 99 | <- | Minus |
| arm_2L | 5587971..5588296 | 1..329 | 98 | | Minus |
