FMO02264.5prime Sequence
731 bp (731 high quality bases) assembled on 2008-05-06
> FMO02264.5prime
CAGTCGACATGAGCTGTCCAGGATTTGGAGAACTAAATATACCCTCGTCG
CGTGCCTTCTGGGACGACTGCGACGAGGATGAATTGGAGAACCTTAAGCC
GGTGGAGAAGCTGCAGCTGAAGTTTGATGATGATTGCGATGGGGAAGCTG
CCCCTGTGGAGAGCGAGATGCTGGTGGTCATTGAGGGCGTCAACGTCACT
CACTTCGCCTCTTCTCTGCTGGAAAAGGATGCAAAGCGTGTGTGCGCCAT
TCCTGCCAATAACTCGACCCTGCACTGGAGTCATTCGTCCAAACAGTTGC
TGGCCATAATCAACGAGGACCTGACCAGTAGCGGCGAGGTAGCGGAGCTC
CTACTGCCGTACGTGAAGCTTGCCAAGAAAGTGATCACTCTGACGCTTAA
GCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCTCTACCGGGATCACA
TTGCCGTTGTCCGCGGCATAGGTGCCAACCAGAAGGATATCACTGAACTA
GAGGCTCCCAACTTTATCGCTGGAGTTGCAGCAGGCGTTGCCAGTTGGCG
GGATCAGATGGAATTGCCTGTTACCTCTTTCGTTATTTACACCGACAAGC
TGCCCCTCGACGCCACAGCTGCGCAGCCAGTGATCAAGGTACTTAAAGCC
GCGGGCGTTGCCTGCAGCTCGAGCTACATCCCTCCGCGGAAGGAGAGCTC
TTATTTGTACATGGCAAGCTTTCTAGACCAT
FMO02264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2046-RA | 893 | CG2046-RA | 96..800 | 9..713 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5793641..5794068 | 537..110 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 5793401..5793577 | 713..537 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 5794121..5794222 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 1743..1806 | 245..306 | 116 | 68.8 | Plus |
FMO02264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:13 Download gff for
FMO02264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2046-RA | 102..824 | 1..724 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:38 Download gff for
FMO02264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2046-RA | 88..810 | 1..724 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:13 Download gff for
FMO02264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2046-RA | 88..810 | 1..724 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:13 Download gff for
FMO02264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5793391..5793576 | 538..724 | 97 | <- | Minus |
| 3R | 5793641..5794068 | 110..537 | 100 | <- | Minus |
| 3R | 5794122..5794230 | 1..109 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:38 Download gff for
FMO02264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1619113..1619298 | 538..724 | 97 | <- | Minus |
| arm_3R | 1619363..1619790 | 110..537 | 100 | <- | Minus |
| arm_3R | 1619844..1619952 | 1..109 | 97 | | Minus |
