FMO02273.5prime Sequence
1223 bp (1049 high quality bases) assembled on 2008-05-06
> FMO02273.5prime
CAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAAATAAACGA
TTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAAACCGAGCT
GATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTTGCGGAATC
TGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGGAATACTCT
GGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTGGCCAAGAC
ATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAGTGCACACA
AGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATTATCAAGGA
TTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAACTTGTTCCG
CGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTCCAATTATC
ACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCCAGGTTATC
TCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTGGATCCCAC
AGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCGAGTGCTGC
CCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTCCGGTTTAT
AGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTACTTTCCTAA
GGGTGACCTGCACATTGCTGCCATGCGTAAAGCCTGTGATCTCCTAGTGC
GTCACGCCGACTTCCGTAATTTTCTGCAAAATGGACGTGCACAACGGAGT
AACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCTTGTGATC
AGACAAATCATACAAATTCAAGCTACGACATGTACTACCTGAGATTCAAG
CAATGCCTTCCTTTGGCACCAAATCCGTTGCATAATGGCGGTGCTTTTAC
TTGTTGCCAAAAAAGAAAACCCGGGCGTAATAAGTGACCTGCTTGATGTG
GAGTCTAATCCCTGCAGCCTCAGTACACCCCGCATTGGAATGGCCTTAAA
TCTGTCGTTGCGACTTTCGAGACCACACAACAGAATGTAACCATCCAGCC
ACGGTGTATGCAACGAGAGCCATGATAAGCCGCCCGACAAATCAATGACC
TAAGGTCGGAAATTTGGAGCGTGATCCTTAACGGTGAATCTCAATGTGAG
AGAAAACTCTCTACAAAGCCTCT
FMO02273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3045-RA | 1663 | CG3045-RA | 93..1254 | 9..1153 | 5150 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22173627..22174112 | 870..384 | 2370 | 99.6 | Minus |
| 2R | 25286936 | 2R | 22174316..22174599 | 292..9 | 1420 | 100 | Minus |
| 2R | 25286936 | 2R | 22173347..22173567 | 1082..872 | 655 | 92.8 | Minus |
| 2R | 25286936 | 2R | 22174168..22174262 | 384..290 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:32 has no hits.
FMO02273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:24 Download gff for
FMO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 132..1222 | 1..1082 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:07 Download gff for
FMO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..1175 | 1..1082 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:55 Download gff for
FMO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..1175 | 1..1082 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:55 Download gff for
FMO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22173329..22173567 | 872..1097 | 93 | <- | Minus |
| 2R | 22173626..22174111 | 385..871 | 99 | <- | Minus |
| 2R | 22174168..22174259 | 293..384 | 100 | <- | Minus |
| 2R | 22174316..22174606 | 1..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:07 Download gff for
FMO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18060834..18061072 | 872..1097 | 93 | <- | Minus |
| arm_2R | 18061131..18061616 | 385..871 | 99 | <- | Minus |
| arm_2R | 18061673..18061764 | 293..384 | 100 | <- | Minus |
| arm_2R | 18061821..18062111 | 1..292 | 98 | | Minus |
