FMO02274.5prime Sequence
761 bp (761 high quality bases) assembled on 2008-05-06
> FMO02274.5prime
CAGTCGACATGGCAGATACTGCGAATTACATCAACGACCGTTTCCAGACC
TTCATGAACGGGCTCGGTGACCGTTATGAGCCCTATGTGCGCGAGCACCT
GTCTAAGGTTTACATGGTCCTGGGCAGCACTGCCGCTGCCACGGCCATGG
GAGCCATGCTTCAGATGCGTGACTTTCTCGATCTTGGAGTCCTGGCGGCG
GTGGCCACTCTAGTCCTGGTCTTGGGTCTGCACTTCTACAAGGATGACGG
CAAGAACTATTATACACGTTTGGGCATGCTCTACGCCTTCGGATTCTGCT
CCGGCCAGACGCTCGGACCGCTCCTCGGCTATATATGCAGCATAAATCCG
GCAATAATCCTGTCTGCCCTTACGGGCACCTTCGTCACCTTCATCTCGCT
CTCCTTGTCCGCCCTTCTGGCCGAGCAGGGCAAGTACCTCTATCTGGGTG
GGATGCTGGTTAGCGTCATCAACACCATGGCGCTGCTGAGTCTCTTTAAC
ATGGTCTTCAAGTCCTACTTCGTGCAAGTGACTCAACTTTACGTCGGCGT
TTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACATTGTGGAGA
AGTGCCGAAACGGAAATCGAGATGTGGTGCAGCACGCTTTAGATTTGTTC
TTCGATGTACTCAGCATGTTCCGCCGTTTGCTGATTATACTGACGCAAAA
GGAGGAGCGAAAACAGAATGAACGCCGCCAGAACAAAACTAAAGCAAGCT
TTCTAGACCAT
FMO02274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BI-1-RA | 1107 | CG7188-RA | 179..913 | 9..743 | 3675 | 100 | Plus |
| BI-1-RB | 1247 | CG7188-RB | 179..871 | 9..701 | 3465 | 100 | Plus |
| BI-1-RB | 1247 | CG7188-RB | 1007..1053 | 697..743 | 220 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8308092..8308545 | 530..77 | 2270 | 100 | Minus |
| 3L | 28110227 | 3L | 8307793..8307965 | 702..530 | 865 | 100 | Minus |
| 3L | 28110227 | 3L | 8308696..8308763 | 76..9 | 340 | 100 | Minus |
| 3L | 28110227 | 3L | 8307339..8307382 | 743..700 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:37 has no hits.
FMO02274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:25 Download gff for
FMO02274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7188-RA | 191..944 | 1..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:41 Download gff for
FMO02274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BI-1-RA | 170..923 | 1..755 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:47 Download gff for
FMO02274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BI-1-RA | 170..923 | 1..755 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:47 Download gff for
FMO02274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8307329..8307380 | 702..755 | 92 | <- | Minus |
| 3L | 8307794..8307964 | 531..701 | 100 | <- | Minus |
| 3L | 8308092..8308545 | 77..530 | 100 | <- | Minus |
| 3L | 8308696..8308771 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:41 Download gff for
FMO02274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8300429..8300480 | 702..755 | 92 | <- | Minus |
| arm_3L | 8300894..8301064 | 531..701 | 100 | <- | Minus |
| arm_3L | 8301192..8301645 | 77..530 | 100 | <- | Minus |
| arm_3L | 8301796..8301871 | 1..76 | 94 | | Minus |
