FMO02276.5prime Sequence
1211 bp (1051 high quality bases) assembled on 2008-05-06
> FMO02276.5prime
CAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCCTGCCGGCC
ATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGTTTGTTGGA
TCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGTGTCCATGC
TGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCTTCTCGCCG
TACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCCTCTGGTGA
CACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGCCGACTCGA
AGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACCGTAAGGAG
CGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGCATATTCTT
CGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCTGGCCGAGG
AGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGCGCAAGCAA
ATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGCAATATGCT
CAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGCCAACGCCG
CCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGAAGACGGTG
CCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTGTCCATGAT
GCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCTCCGCGCCC
ACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTCAGGAGAAGGAG
GACAGCTCGCCGGATGAGAACTCGGACATCTCCATGGTGCTCATCTTGCC
GCCATTTAACAGTAATTCCCTCGAAGATGTGCTCTCCCGGTTGATGCCGA
CAGTCTGGATGATTCGTTGAAGCAGGCAATGCCCCGCGAAATCGAAGTTT
CGCTGCCCAGGTTTGAGTTTGAACAGCGCCTGCACCTTATTCTTATCCTT
GCCAGATGGGAGTTAGCAAATGTTCGATGAGTCTGTCGCTACCTTCGATG
ATCTGACCTCGAACGATTTCCATCGGGTGACCCCAGGCACGTGCCCAAGA
TCAGGTGGGACGAGGAGGGTAGCATGGCGGCGGCGGCTAGTCTCTCTTTA
CCTACGTCGGCCAAGGCAGTGAACCGGCCAAGTTTGGAAGTGCACCATCC
GTCCCGCGTTT
FMO02276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn88Ea-RB | 1518 | CG18525-RB | 110..1311 | 8..1202 | 5375 | 97.2 | Plus |
| Spn88Ea-RA | 1521 | CG18525-RA | 113..1314 | 8..1202 | 5375 | 97.2 | Plus |
| Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 495..646 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15203555..15204537 | 989..8 | 4820 | 99.6 | Minus |
| 3R | 32079331 | 3R | 15203344..15203477 | 1137..1006 | 360 | 89.6 | Minus |
| 3R | 32079331 | 3R | 15207473..15207624 | 646..495 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:06 has no hits.
FMO02276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:28 Download gff for
FMO02276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18525-RB | 83..1292 | 1..1205 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:29 Download gff for
FMO02276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Ea-RA | 108..1317 | 1..1205 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:49 Download gff for
FMO02276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Ea-RA | 108..1317 | 1..1205 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:49 Download gff for
FMO02276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15203550..15204540 | 1..994 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:29 Download gff for
FMO02276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11029272..11030262 | 1..994 | 98 | | Minus |
