FMO02277.5prime Sequence
695 bp (695 high quality bases) assembled on 2008-05-06
> FMO02277.5prime
CAGTCGACATGGGCTTATTCGGCAGAACTCCCAGTAAAGATCCCAAAGAG
CAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAACCAGCTGGA
TCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAAACGCTCGC
TGAAACAGGCAGCACAGAAAAATGACCGCGACACCTGCGTCATTCTTGCC
AAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATATACGTCGAA
GGCGCACCTCAACTCCATTCAGATGCAGATGAAAAATCAGCTATCCACCT
TGCGTGTAGCTGGATCTCTGCAAAAGTCTACAGAGGTCTTGCAAGCTATG
CAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGCGACATGTC
AAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGACGAGACCA
TGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAAGCAAGGAG
GTGGACAAGGTTTTGTGGGAGATCACAGATGGCAAGCTCGGGGAAGCTCC
CCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTCTGCTGCGC
GCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGCAAGAGATG
CAAAGCCGCCTGGCCTCGCTGCGATCTGCAAGCTTTCTAGACCAT
FMO02277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps24-RA | 1114 | CG9779-RA | 116..785 | 8..677 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4309976..4310358 | 677..295 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 4310414..4310656 | 294..52 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 4310785..4310832 | 55..8 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:48 has no hits.
FMO02277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:29 Download gff for
FMO02277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9779-RA | 108..786 | 1..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:24 Download gff for
FMO02277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vps24-RA | 110..788 | 1..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:30 Download gff for
FMO02277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps24-RA | 110..788 | 1..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:30 Download gff for
FMO02277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4309972..4310358 | 295..681 | 99 | <- | Minus |
| 3R | 4310414..4310654 | 54..294 | 100 | <- | Minus |
| 3R | 4310787..4310837 | 1..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:24 Download gff for
FMO02277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 135694..136080 | 295..681 | 99 | <- | Minus |
| arm_3R | 136136..136376 | 54..294 | 100 | <- | Minus |
| arm_3R | 136509..136559 | 1..53 | 94 | | Minus |
