FMO02278.5prime Sequence
1194 bp (1032 high quality bases) assembled on 2008-05-06
> FMO02278.5prime
CAGTCGACATGTTTTTGCAACTCTTATCTATAAGGTTGGCTATGTCACTG
ATCCTTTTAATCAGTGGACAATGGACTTCAGCTCGTCCCCAGAATCCTTA
CTACGTGGAAAACGGCGGACATGGATATCCGAACCATCATCGCCACCATG
GTCATCACGTACATGGGTCAGGATATGGCCCAGGATCCATTGGACCACCT
CCCTTTGTCTTCGGTCGTTTTCCACCGCCTCCTTCGTATTATCCAGATAA
TCAACCATCAGGAGGTCGTCAACCGTATTATCCGAACGTCGGTGCAGTTC
AAGGACAACCTGGCAGTCAATTTCACCAACATGGAGGTGGTTTTCATAGA
GGACAACAGGAATATCCCTACCCTGTAGGTGATTTTAACAGGGGACATCC
AGGCCTCCAGCAACCGGGTGGAGATTTCAACAGGGGCCAACCAGGTTTTC
AGCAGCCAGGAAATGAATTCAATAGACCACAACCATCTGGAAGGGCGCCA
GGACATCAACAATCTGGCAGCCATGAGGAGCTACCCACCTACCCTCGAGG
ATTGGAACCCCAGCAGCCGGGTGGTGATCCAAATACCCTACAGCCTCGAC
CTGGCCAAAACCCTGGTGGATTCGAACAGCCAAATGACAATGCTGGCGGA
TTCCAACAGTCAGGCCAAAATAATGGGGGGTTCCGGCAACCAAGCCAAAA
TTCTGGAGGATTCCAACAGCCAGGCCAGAGTACTGGAGGATTCCAGCAAC
CAGGCCAGAGTTCTGGGGGATTCCAACAGCCAGGCCAGAGTACTGGGGGA
TTCCAACAGCCAGGCCAGAGTACTGGAGGATTCCAACAGCCAGGCCAGAG
TACTGGAGGATTCCGGCAGCCAGACCAGAGTTCTGGAGATTCCAACAACC
AGACCAGATTCTGGAGAGTTTCACACCAGGTCTAAACCAGGGACGAAACC
TGTACTTCTATAATTCATACACCGCGTCCCGAGCGCAGATGAGACTTTCC
GACTTCATTTCAGTCCCAGACTTGCAGCCTCGACCGCAGATACGAAACTG
CGATCTGGCGGACCAACATCACCGATCCGGCATCGCAGTTTCTGTGATCA
ACCATTCAAGGCGTTATCTTGACGTTGACAAACTACAGACTCTTCACACA
TGTATTTTCGGTCCCAGAAATTGGAACACACGCGCGCCTCTTGC
FMO02278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11395-RB | 2279 | CG11395-RB | 53..1132 | 9..1062 | 4785 | 97.5 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 53..1132 | 9..1062 | 4785 | 97.5 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..932 | 643..916 | 700 | 84.1 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..932 | 643..916 | 700 | 84.1 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 743..962 | 639..858 | 695 | 87.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 743..962 | 639..858 | 695 | 87.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 681..902 | 697..916 | 670 | 87.4 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 681..902 | 697..916 | 670 | 87.4 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 738..978 | 604..844 | 530 | 81.3 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 738..978 | 604..844 | 530 | 81.3 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 648..872 | 694..916 | 475 | 81.3 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 648..872 | 694..916 | 475 | 81.3 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 687..833 | 763..908 | 425 | 86.4 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 687..833 | 763..908 | 425 | 86.4 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..810 | 763..914 | 285 | 79.9 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..810 | 763..914 | 285 | 79.9 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 837..978 | 613..754 | 275 | 79.6 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 837..978 | 613..754 | 275 | 79.6 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..782 | 793..916 | 220 | 79.4 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..782 | 793..916 | 220 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17137491..17138309 | 131..945 | 3900 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17138054..17138293 | 664..902 | 730 | 87.9 | Plus |
| 2R | 25286936 | 2R | 17138059..17138278 | 639..858 | 695 | 87.7 | Plus |
| 2R | 25286936 | 2R | 17137973..17138239 | 643..908 | 655 | 83.9 | Plus |
| 2R | 25286936 | 2R | 17137997..17138209 | 697..908 | 640 | 87.8 | Plus |
| 2R | 25286936 | 2R | 17137292..17137414 | 9..131 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 17138054..17138294 | 604..844 | 530 | 81.3 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 643..814 | 470 | 84.9 | Plus |
| 2R | 25286936 | 2R | 17137964..17138179 | 694..908 | 445 | 81.5 | Plus |
| 2R | 25286936 | 2R | 17138003..17138149 | 763..908 | 400 | 86.4 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 613..784 | 335 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17138153..17138294 | 613..754 | 275 | 79.6 | Plus |
| 2R | 25286936 | 2R | 17137973..17138119 | 763..908 | 250 | 79.6 | Plus |
| 2R | 25286936 | 2R | 17137973..17138089 | 793..908 | 190 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:53 has no hits.
FMO02278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:30 Download gff for
FMO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 42..1136 | 1..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:11 Download gff for
FMO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..1137 | 1..1068 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:36 Download gff for
FMO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..1137 | 1..1068 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:36 Download gff for
FMO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17137282..17137413 | 1..130 | 96 | -> | Plus |
| 2R | 17137491..17138453 | 131..1068 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:11 Download gff for
FMO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13024787..13024918 | 1..130 | 96 | -> | Plus |
| arm_2R | 13024996..13025958 | 131..1068 | 96 | | Plus |
