FMO02280.5prime Sequence
1217 bp (1040 high quality bases) assembled on 2008-05-06
> FMO02280.5prime
CAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCAAGGAGCTA
TTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCGATCATTAA
ATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTTGACGATCG
TGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCATAGAAGAT
GTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAGAAGAACGA
CTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCATCTGATAC
CAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCACCAAAATTC
AAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGCGACTACAT
TCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGACAGAACCC
AGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGTTGGCACAG
TGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAATACGAGAA
GGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATTACTCGATG
AATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGCAGCAATAT
AATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACATCTCAACT
GACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGAGTTATCTG
TGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCAAGTATAAA
AACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAGCTCCCAAA
ATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGACCTCACTAA
GTTTTCAATCAAACTGGACAAATTCGACTATTTCATAGAGTATATCACAG
CAGCTAGTCGAACACCTCACTATGCTCAATTACATCGGAATGCACCCACA
CTATCCAAGTTCACGCCCATCTACACCGATATAGTCCTCTGGACTTTCAT
ATGCGCCAGCGAATGCTTCATTGTTCTGCTCCCGCCGATGTGATCACATA
TAAGCACGTAATGGTATCGGAAGGAGGGATCGGATTTAACGTAAAGTTTC
TGGTGCCGCCTACTGAATCGAATAAGTCCATATTGTCCAGTGTCTCACAT
ATACCGGGGTTCTACTT
FMO02280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHKov2-RA | 1450 | CG10675-RA | 58..1208 | 9..1144 | 5250 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25330423..25330921 | 680..182 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 25330197..25330372 | 856..681 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 25330968..25331146 | 187..9 | 880 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25329956..25330142 | 1036..855 | 685 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:53 has no hits.
FMO02280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:33 Download gff for
FMO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10675-RA | 49..1173 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:16 Download gff for
FMO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..1174 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:32 Download gff for
FMO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..1174 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:32 Download gff for
FMO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25329950..25330141 | 856..1043 | 96 | <- | Minus |
| 3R | 25330198..25330372 | 681..855 | 100 | <- | Minus |
| 3R | 25330423..25330919 | 184..680 | 100 | <- | Minus |
| 3R | 25330972..25331153 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:16 Download gff for
FMO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21155672..21155863 | 856..1043 | 96 | <- | Minus |
| arm_3R | 21155920..21156094 | 681..855 | 100 | <- | Minus |
| arm_3R | 21156145..21156641 | 184..680 | 100 | <- | Minus |
| arm_3R | 21156694..21156875 | 1..183 | 97 | | Minus |
