FMO02281.5prime Sequence
1208 bp (998 high quality bases) assembled on 2008-05-06
> FMO02281.5prime
CAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGACCAGACAC
AATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTGGCCCTGAT
GGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCAACCGGATA
GTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACTTGGACGTG
CAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCGGAGAAACC
AAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTATCGATGCGT
TTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGGATAAGACT
TTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTGATTGTCTT
TGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTCATGCGCAT
TTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATTATATCTCA
ACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGACGGCTACAA
AATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCAAACTGATC
TGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGGCGCTGGTG
AATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAACGGGGTGCCACCTAC
TTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTTCCTGGCCGA
GTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCGCTAGCAAGG
ACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGCATCTGCACC
GGCCTGGCTGTGATTGGTGGTCGTCTCGTGGCTTCCAAAATCTCAGTGCG
CACTGTCACCATTGTGGGTGCATTGTGTTCATCGGATTCCGCCATCTACG
CTGTCGCCATACCTCCGATGACATTGCAAGCTTTCTAGACATTCGTTTGG
CGGCGCGGGCCCAGGTAGTGTCATATCATAATCATAGTCATATCATAATC
ACCAACTAGCCTAGAAGATCCTGCCATGAACTAGGCTGATCTCAACCAAT
AAAAACGCTCGGCGCCACGACCTCTGACACAATTCGATGAATTCTGAGGC
TATACTGATCTATCAACGAGTCAAGCGAGACTCGCATATCACAATATTGC
GCCGTGAC
FMO02281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 463..1431 | 9..975 | 4750 | 99.6 | Plus |
| CG42542-RC | 1675 | CG42542-RC | 172..1140 | 9..975 | 4750 | 99.6 | Plus |
| CG42542-RB | 1650 | CG42542-RB | 147..1115 | 9..975 | 4750 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 189..479 | 1455 | 100 | Plus |
| 3R | 32079331 | 3R | 15198971..15199150 | 9..188 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15202022..15202204 | 619..800 | 865 | 99.5 | Plus |
| 3R | 32079331 | 3R | 15202264..15202433 | 798..967 | 755 | 98.8 | Plus |
| 3R | 32079331 | 3R | 15199568..15199710 | 478..620 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:54 has no hits.
FMO02281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:34 Download gff for
FMO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-RB | 183..1164 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:35 Download gff for
FMO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1120 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:02 Download gff for
FMO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1120 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:02 Download gff for
FMO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15198963..15199150 | 1..188 | 98 | -> | Plus |
| 3R | 15199214..15199504 | 189..479 | 100 | -> | Plus |
| 3R | 15199570..15199710 | 480..620 | 100 | -> | Plus |
| 3R | 15202024..15202203 | 621..799 | 99 | -> | Plus |
| 3R | 15202266..15202447 | 800..981 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:35 Download gff for
FMO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11024685..11024872 | 1..188 | 98 | -> | Plus |
| arm_3R | 11024936..11025226 | 189..479 | 100 | -> | Plus |
| arm_3R | 11025292..11025432 | 480..620 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 621..799 | 99 | -> | Plus |
| arm_3R | 11027988..11028169 | 800..981 | 96 | == | Plus |
