Clone FMO02283 Report

Search the DGRC for FMO02283

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:22
Well:83
Vector:pMK33-CFH-BD
Associated Gene/Transcriptretinin-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02283.5prime Sequence

599 bp (599 high quality bases) assembled on 2008-05-06

> FMO02283.5prime
CAGTCGACATGTCTAGATTGTTCCTGCCCGTCTTGGCCATTGTGCTGGTC
TCCATCGGAGCTTCGCATACAGCCAGCTTGGAGTGGCCCTCGAATCTTGT
GGCTCTCAGTTCGGTCAAGTCCTCGCAGCTGCTTCCGATTGCCAGCGAGG
ATTCCGTTGAGTTGGCCGATGGCAGTTCGGGGTCCGTCAGCTCATCCGCT
GCCCAGCCGGAAGATCAATCCCAGGAGGAGGCGGAAGAGCAACAGGTCTC
CTCCGCATCCAGTGGCAGTGCCGATCCGATTAGTGGCCGTCTTGTCTCTG
CCGGAATTCCCGTCTCTGTGCCTCTTCCTCTGATCCTGGCCGCTCGTAAT
GGACTACGAACCGTATTGACCATCCAGGAGCCAGCCGTGGCCAAGGTGGG
CGAGGTGGTGCAGCACGTGCCCACTGCCGTTTCGCATCAGACCCAGACGG
TGGTGCACGATCACCGCCGATTGGTCACACCCATTGTGGCACCCGCTGTT
CGCACCACCCAGGTGATTCGCCAGCAGCCACCACTTCTGTGGAGCGTGGC
CTCCGATCCCCGAGTGGTTCTCATCCGCAACGCAAGCTTTCTAGACCAT

FMO02283.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
retinin-RA 798 CG13057-RA 47..620 8..581 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16332050..16332611 20..581 2810 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:24 has no hits.

FMO02283.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:21 Download gff for FMO02283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13057-RA 61..638 8..586 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:49 Download gff for FMO02283.5prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..624 8..586 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:58 Download gff for FMO02283.5prime
Subject Subject Range Query Range Percent Splice Strand
retinin-RA 47..624 8..586 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:58 Download gff for FMO02283.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16332051..16332615 21..586 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:49 Download gff for FMO02283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16325151..16325715 21..586 99   Plus