FMO02284.5prime Sequence
1212 bp (1028 high quality bases) assembled on 2008-05-06
> FMO02284.5prime
CAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGCCCATATTT
GAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGCAAGAAGAA
TAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCTGGAGGACT
CGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGGATGGCATT
GGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGACGATGAGCT
GGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCTGGACACCA
ACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACCAGGATGCG
ATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGCAATAGTGC
ACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAATACAGCTG
CCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACAAGAAATCT
TCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTGGCGGATGA
GTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGAC
AACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGAC
TCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGG
TCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGA
TCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTG
CCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAA
GTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGGCGACGCCA
TCTACGTGCAAAGGAGGCGAGGACCTGTGTGCGAGGGTGTGAATCTCCGC
ACCGAAGCAGGCATCTTCCCCTCGGCCTACGCCGTGACCTGGACTAACAC
GAGTTCGATCCCACAGTGCAGCTGGTGAAGAGAACGCTTATCTGCTGGCC
TACCTCGATTCGTGGAAAGCTTGGCCACAGGCACCGGAATCGTTTGCCAG
CGGGCCAAGATGGTCGGGAATACGGCACTCCCCGACCCGACGACTGCATT
CTGAGTCGACTGGAACTTCCCATGTGTGGATTGATGCGGCTCGGAATCTC
AAAGCAATAATT
FMO02284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-RB | 2411 | CG1200-RB | 223..1390 | 5..1153 | 5115 | 97 | Plus |
| Aplip1-RA | 2390 | CG1200-RA | 223..1369 | 5..1153 | 4790 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1197509..1198048 | 499..1031 | 2340 | 98.1 | Plus |
| 3L | 28110227 | 3L | 1196937..1197313 | 122..498 | 1885 | 100 | Plus |
| 3L | 28110227 | 3L | 1196539..1196655 | 5..121 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:08 has no hits.
FMO02284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:23 Download gff for
FMO02284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1200-RB | 215..1326 | 1..1100 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:00 Download gff for
FMO02284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RB | 219..1330 | 1..1100 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:41 Download gff for
FMO02284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RB | 219..1330 | 1..1100 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:41 Download gff for
FMO02284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1196535..1196655 | 1..121 | 98 | -> | Plus |
| 3L | 1196937..1197313 | 122..498 | 100 | -> | Plus |
| 3L | 1197509..1198122 | 499..1100 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:00 Download gff for
FMO02284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1196535..1196655 | 1..121 | 98 | -> | Plus |
| arm_3L | 1196937..1197313 | 122..498 | 100 | -> | Plus |
| arm_3L | 1197509..1198122 | 499..1100 | 96 | == | Plus |
