FMO02285.5prime Sequence
942 bp (942 high quality bases) assembled on 2008-05-06
> FMO02285.5prime
CAGTCGACAAGGCCACGACAGCGGCCGCAATGGCCGCAACGAGTGTAGTT
GTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTGCACGGTGC
GACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTTTGTCAGCA
AACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGATTCCCTTT
GTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCATGGATTTGC
GAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCTTCACAATG
GCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTACGCGATCC
ATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTGCGCGAAAA
GGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGAGCTGAGCT
TCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCGATGTGCGC
CGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGACAAGACGCG
GGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGTCAATGAGT
GGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCATCACAAAC
GTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTTCCCGATAC
GGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAGTGACTTCG
GGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCAATGTGACA
TCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGCCAGATCCT
TCAAATTATCATCGAGGGCATGTGAGTCGCAAGACCAAGCGGAATCGCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAAGTAAGT
FMO02285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9008-RA | 1987 | CG9008-RA | 436..1324 | 11..898 | 4405 | 99.8 | Plus |
| CG9008-RE | 2194 | CG9008-RE | 436..1278 | 11..853 | 4215 | 100 | Plus |
| CG9008-RD | 2125 | CG9008-RD | 436..1278 | 11..853 | 4215 | 100 | Plus |
| CG9008-RE | 2194 | CG9008-RE | 1483..1531 | 851..898 | 205 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13775471..13775808 | 702..365 | 1690 | 100 | Minus |
| 2L | 23513712 | 2L | 13775876..13776034 | 366..208 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 13775256..13775407 | 853..702 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 13779642..13779730 | 99..11 | 445 | 100 | Minus |
| 2L | 23513712 | 2L | 13776098..13776159 | 207..146 | 310 | 100 | Minus |
| 2L | 23513712 | 2L | 13777771..13777823 | 148..96 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:07 has no hits.
FMO02285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:35 Download gff for
FMO02285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-RA | 424..1329 | 1..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:24 Download gff for
FMO02285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-RA | 426..1331 | 1..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:41 Download gff for
FMO02285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-RA | 426..1331 | 1..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:41 Download gff for
FMO02285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13775878..13776034 | 208..364 | 100 | <- | Minus |
| 2L | 13776098..13776156 | 149..207 | 100 | <- | Minus |
| 2L | 13777771..13777822 | 97..148 | 100 | <- | Minus |
| 2L | 13779645..13779739 | 1..96 | 94 | | Minus |
| 2L | 13775255..13775406 | 703..854 | 99 | <- | Minus |
| 2L | 13775471..13775808 | 365..702 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:24 Download gff for
FMO02285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13775471..13775808 | 365..702 | 100 | <- | Minus |
| arm_2L | 13775878..13776034 | 208..364 | 100 | <- | Minus |
| arm_2L | 13776098..13776156 | 149..207 | 100 | <- | Minus |
| arm_2L | 13777771..13777822 | 97..148 | 100 | <- | Minus |
| arm_2L | 13779645..13779739 | 1..96 | 94 | | Minus |
| arm_2L | 13775255..13775406 | 703..854 | 99 | <- | Minus |
