FMO02286.5prime Sequence
677 bp (677 high quality bases) assembled on 2008-05-06
> FMO02286.5prime
CAGTCGACATGGGTTGCGCAACGGGCACCATAAAGTACTCGCTGTTCCTG
TTCAATGCCTTATGGGCGATACTCGGTATCCTGGTGCTCATCTTTGGCGG
CCTTGGCTGGGGAGCAATGCCAGATGCATATGCCATCGGCATCTTAATTC
TGGGCGGTACTATCCTGGTAATATCCCTGTTTGGATGCTGTGGAGCCGTT
CGCGAATCGCCGCGCATGCTCTGGACGTATGCGTCACTGCTGCTGATTTT
GCTGCTACTTATAGTGGCGTTTATCATCCTGAATCCCAAAGATGTATTTA
AAAAGTACGCGCTTCAAACGGTGGAGAATCAGTGGGAGCTGGAGCAGACG
AAGCCTGGCAGTATGGATATTATTCAGAAAACGTACTATTGCTGTGGCCG
CGACAGTGCCCAAGACTACTTGGATATCAAATTCTGGAACAATACCGTTC
CAAGTAGCTGTTGCAAGGACGACAGCTGTGTGAATCCACTGAATCTATAT
GTGCGCGGCTGCCTCATCAAAGTGGAGGAGGCTTTTGCAGATGAGGCAAC
CACTCTGGGCTATTTGGAGTGGGGTCTGCTCGGATTCAACGCTGTCATTC
TATTGCTGGCCATCATCTTGGCCATTCACTACACCAACCGGCGGAGACGA
TATAACTATGCAAGCTTTCTAGACCAT
FMO02286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42El-RA | 1062 | CG12840-RA | 181..836 | 4..659 | 3265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7047972..7048180 | 383..591 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 7047276..7047435 | 68..227 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 7047500..7047656 | 227..383 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 7048244..7048312 | 591..659 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 7045949..7046013 | 4..68 | 310 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:10 has no hits.
FMO02286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:37 Download gff for
FMO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12840-RA | 174..832 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:03 Download gff for
FMO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42El-RA | 178..836 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:43 Download gff for
FMO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42El-RA | 178..836 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:43 Download gff for
FMO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7045946..7046013 | 1..68 | 97 | -> | Plus |
| 2R | 7047277..7047435 | 69..227 | 100 | -> | Plus |
| 2R | 7047501..7047656 | 228..383 | 100 | -> | Plus |
| 2R | 7047973..7048179 | 384..590 | 100 | -> | Plus |
| 2R | 7048244..7048312 | 591..659 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:03 Download gff for
FMO02286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2935478..2935684 | 384..590 | 100 | -> | Plus |
| arm_2R | 2935749..2935817 | 591..659 | 100 | | Plus |
| arm_2R | 2933451..2933518 | 1..68 | 97 | -> | Plus |
| arm_2R | 2934782..2934940 | 69..227 | 100 | -> | Plus |
| arm_2R | 2935006..2935161 | 228..383 | 100 | -> | Plus |
