FMO02287.5prime Sequence
1219 bp (1018 high quality bases) assembled on 2008-05-06
> FMO02287.5prime
CAGTCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATATGCGCTCC
TTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCTGCCACCCT
ACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAAGCTGGACA
ACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCGCCACCGTG
GGACTGTGGATCGATGCTGGGTCGCGCTCCGAGAACGAGAAGAACAACGG
AGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGCCAAGCGCT
CGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCCACTTGAAC
GCCTACACTTCCAGGGAGCAGACCGTCTTCTACGCCAAGTGTTTGTCCAA
GGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCAGAACTCCA
AGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTCTGCGCGAG
ATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGATCACCTTCA
CGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCTGGGACCCA
CCAAGAACATTCAGTCCATTGGCAAGGCCGATCTGACCGACTACATCCAG
ACCCACTACAAGGCTTCGCGCATCGTTCTGGCCGCTGCTGGCGGCGTCAA
GCACGATGATCTGGTCAAGCTTGCCTGCAGCAGCTTGGGTGGCCTGGAGG
CCAGTGTGCTGCCCGCGGAGGTGACTCCCTGCCGCTTCACCGGCTCCGAG
GTGCGTGTGCGCGACGATTCCCTGCCCCTGGCCCATGTCGCCATCGCCGT
CGAAGGCTGCGGCTGGACCGACCAAGACACATCCCCTGATGGGTGGCCCA
CACCTTGGTGGGGTGCTTGGGATCGTTCCAAGGCGGTGGCGCCAACACGC
CTCCAACCTGGCCCGTGCCAGCGCTGAGGACAACCTTTGCCACAGCTTCC
AATCGTTCAAACAATGCTACAAGGACACCGGGACTCTGGGGCATTACTTC
GTGTTGCGACCCTCTGCATGGCAGGAAATTGCTCTTCACGTGGCAACGAT
GGATGCGTTCGTGTCCATGGTTACCGAGGCTGAGGTCGAGCGCCCAGACT
CTGGAGAACAACTGGCTGCGTGCATCTGACGGCACTCACCAATACTGGAG
AGAACATGTGGCTGCAGCA
FMO02287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..1195 | 9..1143 | 5140 | 97.6 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..1267 | 9..1143 | 5140 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14890960..14891292 | 283..615 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 14891353..14891723 | 614..982 | 1555 | 97 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 78..285 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 9..77 | 345 | 100 | Plus |
| 3R | 32079331 | 3R | 14891785..14891869 | 983..1068 | 240 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:51 has no hits.
FMO02287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:38 Download gff for
FMO02287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RB | 209..1359 | 9..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:49 Download gff for
FMO02287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 281..1431 | 9..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:52 Download gff for
FMO02287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 128..1278 | 9..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:52 Download gff for
FMO02287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890358..14890426 | 9..77 | 100 | -> | Plus |
| 3R | 14890696..14890902 | 78..284 | 100 | -> | Plus |
| 3R | 14890962..14891290 | 285..613 | 100 | -> | Plus |
| 3R | 14891353..14891723 | 614..982 | 97 | -> | Plus |
| 3R | 14891785..14891876 | 983..1074 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:49 Download gff for
FMO02287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716080..10716148 | 9..77 | 100 | -> | Plus |
| arm_3R | 10716418..10716624 | 78..284 | 100 | -> | Plus |
| arm_3R | 10716684..10717012 | 285..613 | 100 | -> | Plus |
| arm_3R | 10717075..10717445 | 614..982 | 97 | -> | Plus |
| arm_3R | 10717507..10717598 | 983..1074 | 91 | -> | Plus |
