FMO02288.5prime Sequence
1204 bp (898 high quality bases) assembled on 2008-05-06
> FMO02288.5prime
CAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCCTCTGCGGA
CTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATACTATATTA
TGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGATTTCCAGA
GTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCGTGCTCTAT
TTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCACGTCATAGC
CGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCTAGACTGGG
GTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGAACCTCAAA
CAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAAAATGTTCGACCATGG
CCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGGCGGCCAGC
TGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGGGTGTCAGA
AAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTCTTCTATCC
GGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGTGATACACA
CGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGGCGGATTTC
TGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAGCGAAACTA
CAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAGCTGGTGGT
TCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCGATGCTGTG
CCCGCCAAGAATGGTCAGACTTCAGCAGAACAAAATAGTAGAGAATCGCC
CGCCCGTGGTGATGGGTCATCATTGTCCCACGAACAATCATGGCGACTTA
CCTACAATCAACGAACATACATCTTTTGCTCGAGCAGAAGGGCACTGTCT
ACGTGATCCAAGGATCTGCTGGGAAATAACCCACGCATCACCTTGTGACT
GCCCGTCGAAGAAAACGATGCCAGCTTTCTAAACATTCGATGGCCGCGGG
CCCAGGGAATGGTCATATCCAAACGTAACTAAACCTAATCAACCTAGCCT
AAGGAAATCTGCATGACATAGGGTCTGAATTCCACAATAAATCCGGGCAC
GAGCTCGAAACCCGATTGGGATTCGTAGAGTCTTATATCGTGATACTCTA
CAAG
FMO02288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17292-RD | 1473 | CG17292-RD | 327..1346 | 7..1018 | 4640 | 97.8 | Plus |
| CG17292-RC | 2003 | CG17292-RC | 857..1876 | 7..1018 | 4640 | 97.8 | Plus |
| CG17292-RB | 1397 | CG17292-RB | 251..1270 | 7..1018 | 4640 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8372880..8373288 | 103..511 | 2045 | 100 | Plus |
| 2L | 23513712 | 2L | 8373538..8373913 | 510..883 | 1750 | 98.9 | Plus |
| 2L | 23513712 | 2L | 8372687..8372753 | 37..103 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 6..59 | 117 | 68.5 | Plus |
FMO02288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:39 Download gff for
FMO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-RB | 263..1287 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:35 Download gff for
FMO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-RA | 103..1127 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:12 Download gff for
FMO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-RB | 246..1270 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:12 Download gff for
FMO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8372591..8372625 | 1..36 | 91 | -> | Plus |
| 2L | 8372687..8372753 | 37..103 | 100 | -> | Plus |
| 2L | 8372881..8373288 | 104..511 | 100 | -> | Plus |
| 2L | 8373540..8373914 | 512..885 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:35 Download gff for
FMO02288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8372591..8372625 | 1..36 | 91 | -> | Plus |
| arm_2L | 8372687..8372753 | 37..103 | 100 | -> | Plus |
| arm_2L | 8372881..8373288 | 104..511 | 100 | -> | Plus |
| arm_2L | 8373540..8373914 | 512..885 | 98 | -> | Plus |
