FMO02289.5prime Sequence
1199 bp (1024 high quality bases) assembled on 2008-05-06
> FMO02289.5prime
CAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGACGTCGGTC
CACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAATTTCGCCAT
CAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGTGGATGTCC
TCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGAGCCAACTG
ATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTTGGTATTGA
GAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGCTGAGGCCA
TCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTCCCGACGAG
AAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCGCCCAACGG
TACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGCAATCATCT
GCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTATTGTGATC
GGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTACGTGGTTCC
CGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGGTCAGGTGA
TCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCCTGGGAATG
TTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCTTTCAAATA
TGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAACACCATTC
TGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACCTGTACAAC
AAGCAGTACAAGAAAGAGTACGAGGCGGCGGGCATCTGGTATGAACAACC
GTCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGAGGTGGCTTCG
TGTGGCCTGCAGAACTACGACGGTGATGTGCAGTCGACTTCCGTTGCCCA
GGGCTACGATCTCTGGGTCTGATGACCTCGTGCTGCTATGCCCGATGCAG
ACGTGAGCTGAAGCCGCTCACGGAACGGGACGCGTCACTTCCGCTCTACA
GCAGGCAAGGAGACCTCCACAACCCATTGCCCGATATTCGCTTGAACCGT
GATGCTGCATCTGTCCAGCCTGACACAATGACCATGAGCAGTTCGCGCGA
ACCCTTTGGACAGGTGTCACTATCACAACATTTAGAACGCCACGCCATG
FMO02289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1468 | 9..1156 | 4995 | 96.7 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1345 | 9..1156 | 4995 | 96.7 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1378 | 9..1156 | 4995 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8357019..8357906 | 993..110 | 4085 | 98.9 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:03 has no hits.
FMO02289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:41 Download gff for
FMO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-RJ | 222..1337 | 3..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:28 Download gff for
FMO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1316 | 3..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:05 Download gff for
FMO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1316 | 3..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:05 Download gff for
FMO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8358556..8358662 | 3..110 | 97 | | Minus |
| 3L | 8356932..8357905 | 111..1070 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:28 Download gff for
FMO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8350032..8351005 | 111..1070 | 98 | <- | Minus |
| arm_3L | 8351656..8351762 | 3..110 | 97 | | Minus |
