FMO02290.5prime Sequence
1205 bp (975 high quality bases) assembled on 2008-05-06
> FMO02290.5prime
CAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGGAGCGGACT
CGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCCATTGCAGA
GTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGAAGAGGAGG
ATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACACTAGGCACT
CAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATAAGGGACCT
TATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAATATAAGCA
ACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATGGAAATATA
CAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGGCGGCATGT
TTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTTCGAAGACG
ACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGTTCATCAGG
CGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATTCCGCGCTC
TTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTTGCAACTGC
CTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTTCAGAAGAG
CGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTCCACATTGA
GTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGGCTGCGATG
GCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCCACACTCTG
GGTTACAACAAGATCTCGCTGGGGATCAGTTTCATTGGATGCTTCATGAA
AGACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAATCTGTTGGCCCG
CGGCGTTGAGGATGGTCACATATCCACGGACTATAGATTAATTTGTCACT
GCCAGTGCAATTCGACGGAGAGTCTGGTCGGCGATTGTACCAGAGAATAC
AGACCTGGCCCACTTTAACAATATCGAGGAGGAGGAACAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGCGGGCCAGGTATGGGACATAAATCATATC
TAAATCATATCTAATTCCAACTAGCCTAGGGAATCCCTGCCTGACTATGC
TGGATTCCACAATAAAATGCCTGGTGCAGCGAGCGTCTCGTAACAACTCT
CCGAA
FMO02290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LE-RB | 2073 | CG8995-RB | 935..1971 | 6..1039 | 4975 | 98.9 | Plus |
| PGRP-LE-RA | 1398 | CG8995-RA | 260..1296 | 6..1039 | 4975 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15801255..15801613 | 1039..684 | 1525 | 96.9 | Minus |
| X | 23542271 | X | 15802140..15802440 | 507..207 | 1505 | 100 | Minus |
| X | 23542271 | X | 15802509..15802710 | 207..6 | 1010 | 100 | Minus |
| X | 23542271 | X | 15801963..15802076 | 621..508 | 570 | 100 | Minus |
| X | 23542271 | X | 15801683..15801747 | 686..622 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:05 has no hits.
FMO02290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:42 Download gff for
FMO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8995-RA | 214..1252 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:59 Download gff for
FMO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1296 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:58 Download gff for
FMO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1296 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:58 Download gff for
FMO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15801255..15801610 | 687..1039 | 97 | <- | Minus |
| X | 15801683..15801747 | 622..686 | 98 | <- | Minus |
| X | 15801963..15802076 | 508..621 | 100 | <- | Minus |
| X | 15802140..15802439 | 208..507 | 100 | <- | Minus |
| X | 15802509..15802712 | 1..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:59 Download gff for
FMO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15695288..15695643 | 687..1039 | 97 | <- | Minus |
| arm_X | 15695716..15695780 | 622..686 | 98 | <- | Minus |
| arm_X | 15695996..15696109 | 508..621 | 100 | <- | Minus |
| arm_X | 15696173..15696472 | 208..507 | 100 | <- | Minus |
| arm_X | 15696542..15696745 | 1..207 | 98 | | Minus |
