FMO02292.5prime Sequence
910 bp (910 high quality bases) assembled on 2008-05-06
> FMO02292.5prime
CAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCAACTTCTTC
AACTCCTTCAACAACAACTGCAGCTTTTCCAAGAGCAACTCAAACGGCGG
TAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCCCCCACGGA
AGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCTCACTTGGC
CACAAAATCGATGATCCGTTCGATGAGCTAGACGACTTTGAAATGCTGGC
AGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGGAGAAGCCA
ATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAGGATCCACA
GGAGCGGCAGGCTGTGGGAACGGCAATGGGAACGGTAACGGGAGTGGAAA
CGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCAGGGCAACT
ACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGGCGAAAGCC
AAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCGAAGGAGAT
TAACGAAAACACAATAAGTCGTCTGCATGCGCTGGCCATGGCGGATGACG
ATGATGACTACGACGAATCACTCACCTGCAACGTGTGCGACCGAGCTTTC
CATTGTCACCGCCAGTTGGCATCGCACCAGCAGAAGAAGCGACACTTCGG
TTGCAGTGGCTGCGATAGTTTGTTCCCGTCGCTAATGCTGCTGGAGCACC
ACAAGGAGGAATTTGAGCACTGGAGCGACGAGGAGATTGGTCGCAGGTCT
GTTGTCGCCGGAACAGGTGCGACGACGATTATTTCACGGACACCGACTCC
TTTATCAGCGACGCGGAGAGCGAGGATCTGGAGAGGCTGTTGGCAAGCTT
TCTAGACCAT
FMO02292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11317-RA | 1795 | CG11317-RA | 252..1137 | 8..892 | 4405 | 99.9 | Plus |
| CG11317-RB | 1804 | CG11317-RB | 252..1146 | 8..892 | 4305 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31092055..31092545 | 612..122 | 2455 | 100 | Minus |
| 3R | 32079331 | 3R | 31091370..31091563 | 892..700 | 920 | 99.5 | Minus |
| 3R | 32079331 | 3R | 31096955..31097070 | 123..8 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 31091686..31091774 | 700..612 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 35..117 | 127 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 46..117 | 126 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6849 | 41..117 | 115 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2410 | 29..124 | 114 | 62.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..577 | 50..93 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 28..121 | 110 | 57.4 | Plus |
FMO02292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:44 Download gff for
FMO02292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-RA | 242..1137 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:19 Download gff for
FMO02292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-RA | 245..1140 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:34 Download gff for
FMO02292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-RA | 245..1140 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:34 Download gff for
FMO02292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31091366..31091562 | 701..896 | 98 | <- | Minus |
| 3R | 31091686..31091773 | 613..700 | 100 | <- | Minus |
| 3R | 31092055..31092543 | 124..612 | 100 | <- | Minus |
| 3R | 31096955..31097074 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:19 Download gff for
FMO02292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26917088..26917284 | 701..896 | 98 | <- | Minus |
| arm_3R | 26917408..26917495 | 613..700 | 100 | <- | Minus |
| arm_3R | 26917777..26918265 | 124..612 | 100 | <- | Minus |
| arm_3R | 26922677..26922796 | 1..123 | 96 | | Minus |
