FMO02295.5prime Sequence
1209 bp (1005 high quality bases) assembled on 2008-05-06
> FMO02295.5prime
CAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAGATATCGCT
CATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCATCCGTTTT
CGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCTGTCATTGG
CGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATAAAATATGC
TCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTCATATATCA
TCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTATAGCCGCCT
CGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTGCAATAGAC
CAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTACGACGGCGA
TAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCCTAAGAAAT
CGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTGAGGAGTCA
CATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGACGCTGAGTT
AACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGAAATAAACT
CACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAGACCAAAAC
TTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAGCAGGAGCA
GTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATGCGGACCTC
AGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATAAACTAATG
GGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGGAAATCGCT
ACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCTAACCACCG
ACAACGAGGAAAACATTTTCAGTAGAATCAACGAGTGAAAATAGACTGCT
GCAACTGGAGTCATTTCGCCGAGTACAGACCCTTCACAAACGTGAACCGT
CATCTATGAGCCGCGCCGCCGAAGAAAAGCCGAAGAAATCGTATCGGCGC
AGATTACTGCATTCAATCAAAAGATAAGATGCAGCGAATTAGCGCAAGCC
TTCTAGAACATTCGTTGGCCGCGCGGCCAGGTAATGCCATATCCTAATCA
AAACCATAACCTAAATCCACACCTAGCCTATGGAGAATCCCTGTTCTGAG
ACAATGGTC
FMO02295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42503-RA | 1420 | CG42503-RA | 296..1394 | 8..1091 | 5070 | 98.3 | Plus |
| Mocs2-RA | 1420 | CG10238-RA | 296..1394 | 8..1091 | 5070 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25126567..25126875 | 444..136 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 25126167..25126442 | 720..445 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 25125834..25126104 | 985..719 | 1140 | 98.2 | Minus |
| 3R | 32079331 | 3R | 25126932..25127064 | 140..8 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:09 has no hits.
FMO02295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:47 Download gff for
FMO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10238-RA | 275..1342 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:31 Download gff for
FMO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42503-RA | 288..1355 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:52 Download gff for
FMO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mocs2-RA | 288..1355 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:52 Download gff for
FMO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25126167..25126442 | 445..720 | 100 | <- | Minus |
| 3R | 25126567..25126873 | 138..444 | 100 | <- | Minus |
| 3R | 25126935..25127067 | 1..137 | 97 | | Minus |
| 3R | 25125834..25126102 | 721..985 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:31 Download gff for
FMO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20952657..20952789 | 1..137 | 97 | | Minus |
| arm_3R | 20952289..20952595 | 138..444 | 100 | <- | Minus |
| arm_3R | 20951556..20951824 | 721..985 | 98 | <- | Minus |
| arm_3R | 20951889..20952164 | 445..720 | 100 | <- | Minus |
