FMO02301.5prime Sequence
1223 bp (974 high quality bases) assembled on 2008-05-14
> FMO02301.5prime
CAGTCGACATGGATCGAGTGACCAAGCCGCAGAAGAAGATGCTCATCACA
CTGCTGCGGGAAACCAAGTACATGGAGGGCAAAAAGGAGAAGGAGTGGTA
TTGGGAGAAGATCCAAGCGGCCCTTAATACTATTGGTCCCAAGAAGACGA
TTATTCAGTGGAAAAAGTGCTGGCGCGATATGCGACTGACCACAAGGAAA
AAGCTGGCGGAACTGAAGCGCTGTCAACTCTCTGGAGGATCTCCACCACC
GGGGATCGAACTAAACCAGGAGGACAACGATATCATCGACATTGTGGGCA
CCGAGTACTTCTACGAGGAGATGAATGGTGAGCTCAAGGCGGAGAACTTC
TTGACCGGCTTGGACTACGCCCCGGAGCATCTGTGCGATGCTATTCTCAC
GGCAGCAGTGGGCCATCACCAGCACAATATGCAGCACCAGAAGGATCCGC
AATCGCATGCAGGGCAACAGCAGCAGCAGGATCATCACACCAACGATGGC
GAAACCAATGATGCTCCTGGATCAAGCAATGGTGGCTCATATCAGGGACA
CCCAGTATCCCAGTTGCAGGCGCACAATGGCAGCGGTGGAGGAGGCGAGC
ATAGCGGCGGTGGTCAATCCCACTCCGGAATGCTCCAGCACCCTGCTTTT
CACGGTGGCTTGCATCCACACCTGTTGAGGCGCCAGCATGGAAGTGGATC
ACTATCCAGAGAGTCGCCATTTGAAGAGAAGCTTCTGCAGTTCATGCAGG
ATGCATTTCCAAAAAAGAGCAAGAAGCGCAAGAACCGGGATCCCGACAGC
TGTTCCTCTTATCCCTGTACGAAGAGATCAAGAGAGTTCCGGAGGAGATA
CGCCTTGATGTAAAGTCCGAACTAATGCAGATACTGAAGAGTATCAAAAG
AAGTCGCCTGTCAAAGCGGAGAGCCGCGCCTTCCTCTACGTTCAACCTCC
TCCAAACTCAGCTCTAGCAGCAGTGCAGTAGCACGGTGACTACTTCACTT
GTCCACAGCATGTACCAGTTGCAAAAGAATACCAAAAAGGCCGAGGCGTG
AACCATTCGCCTCCATCACCGGTAGAGCGAGTACATCTGCAGTCCCAATT
GCTGTGTCCAATTCAAACTTCCAACACGTGCCTCTTTTCCAACTTCGAAA
AAGTCTAGGAAACAGCGTGAAAAGGTTCTCATATCAGCACGCAATACGCA
AGATGCGATGACACCAGCCAAGA
FMO02301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10209-RB | 2024 | CG10209-RB | 164..1341 | 8..1178 | 5145 | 96.7 | Plus |
| CG10209-RA | 2024 | CG10209-RA | 164..1341 | 8..1178 | 5145 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14846783..14847766 | 1146..166 | 4050 | 96.4 | Minus |
| 2R | 25286936 | 2R | 14847816..14847972 | 167..11 | 785 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1056..1176 | 395..507 | 161 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6872 | 399..494 | 150 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2396 | 414..496 | 137 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6828 | 414..487 | 135 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2450 | 399..508 | 133 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2526 | 414..494 | 128 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2950 | 407..574 | 128 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2387 | 431..508 | 124 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6803 | 413..494 | 124 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2720..2835 | 384..494 | 116 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2832 | 413..477 | 116 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6901 | 403..496 | 116 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1587 | 414..477 | 113 | 64.1 | Plus |
FMO02301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:56 Download gff for
FMO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10209-RA | 149..1324 | 1..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:37 Download gff for
FMO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10209-RA | 156..1331 | 1..1169 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:48 Download gff for
FMO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10209-RA | 156..1331 | 1..1169 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:48 Download gff for
FMO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14846757..14847764 | 168..1169 | 96 | <- | Minus |
| 2R | 14847816..14847978 | 1..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:37 Download gff for
FMO02301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10735321..10735483 | 1..167 | 97 | | Minus |
| arm_2R | 10734262..10735269 | 168..1169 | 96 | <- | Minus |
