FMO02302.5prime Sequence
1207 bp (1026 high quality bases) assembled on 2008-05-14
> FMO02302.5prime
CAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGGCCAGCGTG
GCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGACATCAATGC
TCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGGAAATGAGG
CATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCAGTCGCGTG
ATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTGGAGAAGTA
CGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTCGCTGCGTC
AGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGCGATCCGCT
GAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAGATCAATGC
CTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATCCGTCCAGG
TGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCACTATCACC
AATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGATGCTGGTAT
CCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGTGATCCATC
AGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGGACTTTGAC
TGGGTTATCCTGCCGGTGGTGAATCCCGATGGCTATGAATACTCTCACAC
CACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAGTGCCTGCT
ATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAGAGGTTGGT
GCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACGGCCCTTCT
CCGAGCCGGAGACTCAGTTGATTCGCGATATCCTGCTCAGTCTGACCGGG
ACGTGGCCAAGTTCTACCTGACCCTCCACTCTATGGCACTACCTGCTGTA
TCCTTGGGGCTGAACGTCTGCTCTGCCCAGCAGCTGGCGCGACACGATGA
GTGGCCCACGGTGGAGCGAAGCCATCAAGAGTGCAGACGGGAACGAAGTA
TAACGGTGGGCAGTTCCATCAACGTTCTGTAAGCTGCTTGCGGCGGCATG
AACGAACTAGCTCGGGAGGGCCACTTCCGGGGGTCCAATACATGGAACGC
GTCGGCGGTACTGCTTCAATCAGAACACCAATACTGGAGGGCGTTCCTCT
CTGTCGG
FMO02302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8560-RB | 1334 | CG8560-RB | 47..1217 | 9..1171 | 5110 | 96.8 | Plus |
| CG8560-RA | 1566 | CG8560-RA | 279..1449 | 9..1171 | 5110 | 96.8 | Plus |
| CG8562-RA | 1483 | CG8562-RA | 501..703 | 486..688 | 310 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7402728..7403619 | 968..76 | 4210 | 99.3 | Minus |
| 3L | 28110227 | 3L | 7403836..7403903 | 76..9 | 340 | 100 | Minus |
| 3L | 28110227 | 3L | 7398870..7399072 | 486..688 | 310 | 76.8 | Plus |
| 3L | 28110227 | 3L | 7402530..7402660 | 1098..969 | 295 | 90.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:18 has no hits.
FMO02302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:57 Download gff for
FMO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1378 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:42 Download gff for
FMO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1378 | 9..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:12 Download gff for
FMO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1378 | 9..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:12 Download gff for
FMO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7402728..7403618 | 77..968 | 99 | <- | Minus |
| 3L | 7403836..7403903 | 9..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:42 Download gff for
FMO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7395828..7396718 | 77..968 | 99 | <- | Minus |
| arm_3L | 7396936..7397003 | 9..76 | 100 | | Minus |
