FMO02303.5prime Sequence
1206 bp (1030 high quality bases) assembled on 2008-05-14
> FMO02303.5prime
CAGTCGACATGTTGCGTCTCACAGTAAAGCACGGCCTGCGGGCCAATTCC
CAGCTGGCTGCCACCAGAAACCCAGATGCATCATCGTACGTCCAGCAGCT
GGAATCAGAATGGGAGGGCGCCAAACCCTTTACGGAACTTCCCGGCCCGA
CACGCTGGCAATTGTTCCGCGGCTTCCAGAAGGGCGGTGAGTACCACCAA
CTGGGCATGGATGATGTGATGCGGCTGTACAAAAAGCAGTTCGGCGACAT
ATGCTTGATACCCGGATTATTCGGCATGCCATCCACTGTGTTCACGTTCA
ATGTGGAAACCTTTGAGAAGGTCTATCGCACCGAAGGTCAGTGGCCCGTC
CGCGGTGGCGCCGAACCCGTCATCCACTACCGCAATAAGCGGAAGGATGA
GTTTTTCAAGAACTGCATGGGATTGTTCGGCAATGGCGCGGAGTGGGGAA
AGAATAGAAGTGCCGTGAATCCCGTCCTGATGCAGCACCGAAATGTTGCA
ATCTATCTGAAACCGATGCAGCGCGTCAACCGGCAGTTTGTGAATCGCAT
CCGCGAGATTCGCGACAAGGAGTCCCAAGAAGTGCCCGGTGACTTTATGA
ACACCATCAACCACCTGACCTTCGAGTCAGTGGCGACAGTGGCCCTTGAC
AGGGAATTGGGACTACTCCGGGAAGCCAACCCGCCGCCGGAGGCTAGTAA
ACTGTTCAAGAATATCGAAGTCCTAATGGATTCCTTCTTCGACTTGGGCG
TGAGACCATCATTGTATAGGTACATCCCCACACCCACCTACAAGAAGTTC
AGTCGGGCCATGGATGAAATTTTCGACACCTGTTCGATGTACGTGAATCA
AGCGATAGAAAGGATCGACCGGAAATCTTCACAAGGCGATTCAACGATCA
TAAAAGTGTTCTCGAGCAGTTGCTGCAAATCGATAGAAAGCTCGCCGTTG
TTATGGCCATGGACATGCTGATGGGAGAGTTGATACCACCAGTACGGCAT
CTCTGGATATTGCTCATCTGGTCAGAATCCGGAGAGCAGCAGACTCAGGA
GGAAGTTCTAAGCAACTACCTTCGCTCATACGATTAACGGTGAGGATTGA
AATCCCTTCGGATCTCAAGCGTCCATCAGGGAATCCTCAATTGTATCAGT
CCCTTGTAACTCGGATCGCCGAACCTAAGTTGTTCTCTCGCATGTGCCAT
TCACCC
FMO02303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-RB | 1884 | CG4120-RB | 26..1185 | 8..1147 | 5145 | 97.3 | Plus |
| Cyp12c1-RA | 1614 | CG4120-RA | 26..1185 | 8..1147 | 5145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18685125..18685691 | 998..434 | 2720 | 99.5 | Minus |
| 3L | 28110227 | 3L | 18685869..18686294 | 433..8 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:19 has no hits.
FMO02303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:58 Download gff for
FMO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4120-RA | 20..1152 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:28 Download gff for
FMO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 20..1152 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:47 Download gff for
FMO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 20..1152 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:47 Download gff for
FMO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18685050..18685691 | 434..1065 | 98 | <- | Minus |
| 3L | 18685869..18686300 | 1..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:28 Download gff for
FMO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18678150..18678791 | 434..1065 | 98 | <- | Minus |
| arm_3L | 18678969..18679400 | 1..433 | 99 | | Minus |
