FMO02304.5prime Sequence
1196 bp (1048 high quality bases) assembled on 2008-05-14
> FMO02304.5prime
CAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGT
CCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAG
AGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGT
TGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGT
GACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAAC
CGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCG
CCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATC
CACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGT
CTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTG
CTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGTACAACAAG
GTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCGATGCGACT
GGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAG
CCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTGACGAGGAA
GAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACAGACGAAGA
GGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTTTCGCGCCT
TGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACATTTCCAAC
ATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTGCGCATAAC
TAACGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCACGGGCTAGAT
ATGTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATGAACTGATTCAG
CGCCGCGGGAGAACAGAGAAAGTGCATCAGCAGGCTCATTCGCATCAGCA
AGCTTCTTTCTCAAGCCGCCAGGCAAACAAGCGTTCGCTGGAAAGTGACA
GCGACACTCCAGCTCACTGCGATCTCCTAGCGGCAGTCGAATAGCAGACA
CGTGAACGCCATCGGAATGGGAGGCTGAACACGCGAATGGAGTCCTCACT
GCATCATAGAAAGGTCCAAAGAACGCTGGTGTCTTGTGCCACATCT
FMO02304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 358..1539 | 9..1171 | 5180 | 97 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 343..1524 | 9..1171 | 5180 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21517981..21518398 | 678..261 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 21517535..21517923 | 1056..677 | 1520 | 96.9 | Minus |
| 2R | 25286936 | 2R | 21518457..21518709 | 261..9 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:05 has no hits.
FMO02304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:00 Download gff for
FMO02304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 335..1439 | 4..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:17 Download gff for
FMO02304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 339..1443 | 4..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:42 Download gff for
FMO02304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 339..1443 | 4..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:42 Download gff for
FMO02304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21517491..21517921 | 679..1095 | 95 | <- | Minus |
| 2R | 21517981..21518397 | 262..678 | 100 | <- | Minus |
| 2R | 21518457..21518713 | 4..261 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:17 Download gff for
FMO02304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17404996..17405426 | 679..1095 | 95 | <- | Minus |
| arm_2R | 17405486..17405902 | 262..678 | 100 | <- | Minus |
| arm_2R | 17405962..17406218 | 4..261 | 99 | | Minus |
