FMO02305.5prime Sequence
845 bp (845 high quality bases) assembled on 2008-05-14
> FMO02305.5prime
CAGTCGACATGTCAAAGCTCAGGAACCTGTTGCCCACAATCTTTGGCGGG
AAGGAGGCACAGAATCCGACACCCGTCGAGGGACGCCTGGAAAAGGACGC
AGCTCCCGTGGACGACAACGAACCAGATAACAACAACAGCGGAGCCCTGG
CGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCCTCGGATCTGACCGAA
TCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAATTCAATGGATGTGGT
GCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGACAAACAACA
CCATGAACGTACACAGCGCCCAGCAACAGGTGGTCATGAACTTCTCGAAT
GCCAATAATCTGCACTTCGGCTCCGTCTACAACTTCAACCAAAACTTGAG
CGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCGCAGAGGAGTCGGTCG
CCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACGCGCAAAACGGTCAGC
ATTGTGGCCATGATGCAGTCACAAGAGGAACCGGATGTGCGCCTGCTCGA
TGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGCAGGTGATGCGGGATC
TTGGCATGTCGGAAGGACAGATCGACCAGGCCATAATCGATCACCAAATG
CATGGCAATATTAGAGAGGTGATATACCAGCTGTTGCTCCAGTGGATTCG
AAGCTCGGCGGACGGTGTGGCCACCGTTGGACGACTTACTACACTGCTGT
GGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATGAAACTGGTTTGGAAG
GCACTGGAGAAGCGCAAGACAAACAGCGCAAGCTTTCTAGACCAT
FMO02305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 320..1139 | 8..827 | 4100 | 100 | Plus |
| imd-RA | 1320 | CG5576-RA | 122..941 | 8..827 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411411 | 670..8 | 3315 | 100 | Minus |
| 2R | 25286936 | 2R | 18410175..18410335 | 827..667 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:25 has no hits.
FMO02305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:01 Download gff for
FMO02305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5576-RA | 286..1112 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:47 Download gff for
FMO02305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 115..941 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:05 Download gff for
FMO02305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 115..941 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:05 Download gff for
FMO02305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410175..18410333 | 669..827 | 100 | <- | Minus |
| 2R | 18410751..18411414 | 1..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:47 Download gff for
FMO02305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297680..14297838 | 669..827 | 100 | <- | Minus |
| arm_2R | 14298256..14298919 | 1..668 | 99 | | Minus |
