FMO02306.5prime Sequence
1199 bp (1027 high quality bases) assembled on 2008-05-14
> FMO02306.5prime
CAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTTTGGTTACT
TCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGCATCGGTTC
TCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTTATTGTTCG
ATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTGACCTTTTC
TGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAACAACCAGAT
CTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGACCCTATTC
ATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTGTTCGGTGT
CTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTGCCAAATTG
CACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCATTGGTTTAA
TAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAATTGAAATAT
ATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCAGAGACCCA
ATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAGTTACCAAA
AAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGTACTTGGCA
AAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGCAGTTTGGT
CCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGACTTGCTGA
CCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGCATTGGACG
AAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGTTTGGGTGT
TTCCGGAACCGTGAAGCTGCCGACGTTCGCCGGGCAATCATGCAACGGAA
GCCGATCGCTCAACATTGAACTGATTGGTGGCAAATTCCTGCCCATTCCC
GCCACATTTGGGCCCATGTTCACGCTGTGAAAGTCGGTACCGGACAGATG
AGTTCGTCATCATGGACCACACTCGCCCTTTTATCGCAATGACTAAGCAA
TCTGGTGCCCCTCGATGATGCAACAAGTTCTGACTGAGAACCCCCTCTTC
TCGAACTCCACGAGTTTCCGCTTTGGAATGGTGCCATGCTGCTGTGAGAT
TTGGCCAACACCTGGACAATTTTCCGGTCCCTTGTGAAGTGAAATATCT
FMO02306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2233-RA | 1480 | CG2233-RA | 33..1225 | 9..1183 | 5250 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8036239..8036637 | 1013..620 | 1780 | 98.7 | Minus |
| X | 23542271 | X | 8036900..8037212 | 545..233 | 1565 | 100 | Minus |
| X | 23542271 | X | 8037262..8037485 | 232..9 | 1120 | 100 | Minus |
| X | 23542271 | X | 8036726..8036804 | 622..544 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:12 has no hits.
FMO02306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:02 Download gff for
FMO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 9..1221 | 1..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:21 Download gff for
FMO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 26..1238 | 1..1197 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:44 Download gff for
FMO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 26..1238 | 1..1197 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:44 Download gff for
FMO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8036220..8036634 | 623..1031 | 97 | <- | Minus |
| X | 8036726..8036802 | 546..622 | 100 | <- | Minus |
| X | 8036900..8037212 | 233..545 | 100 | <- | Minus |
| X | 8037262..8037492 | 1..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:21 Download gff for
FMO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7930253..7930667 | 623..1031 | 97 | <- | Minus |
| arm_X | 7930759..7930835 | 546..622 | 100 | <- | Minus |
| arm_X | 7930933..7931245 | 233..545 | 100 | <- | Minus |
| arm_X | 7931295..7931525 | 1..232 | 98 | | Minus |
