FMO02307.5prime Sequence
1188 bp (1002 high quality bases) assembled on 2008-05-14
> FMO02307.5prime
CAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGCCGGGAAGT
GAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACGATCAAGCG
GCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCAGGCTCTCT
GCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCGGCCGGATC
AAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGGTACCTGAA
GAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGATGGCGGAGG
CGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACCGGATGCGG
CTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTGCTCAATCT
GATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTTGGGCGGTC
AATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGTCCGACGAG
CTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGCAAGTTCCA
CAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCTTTGCGTGA
TGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGTGGTTCTGG
TACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGGAGAATTTT
AACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTCTCTCTATT
GGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGGTAATTGAT
AAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGCTCCAACCT
TTCGGAGTTCCTATTCAAGAAGGTATCTATCATTTGGCTAGTGAGTCCCC
AATCCCGATCACGATACGATGTCAATGCCTATCGAGAGGCACCGCCCACG
CCCGCTAGACCGTTATCCGAGCTCATGTCTGGATACATTGATTCACACTC
TTGCACTCGACGCAATGCTCGCCCTCTTGCGCGACCTAGGCAATCGAACT
CGGAATTGGCAAAGTACTGTAACAAGCTTTCTAACATCGTTGGGCGCGCG
TCAGTATGGCATAACAATAACCTAATCTACCTAATCAACATGACTAGGAA
TCTTGCATGACATAGTGCTGTGAATCCACACATAACAT
FMO02307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx7-RB | 1690 | CG2977-RB | 487..1518 | 9..1027 | 4845 | 98.7 | Plus |
| Inx7-RA | 1634 | CG2977-RA | 432..1462 | 10..1027 | 4840 | 98.7 | Plus |
| Inx3-RC | 1652 | CG1448-RC | 864..981 | 534..651 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6992173..6992883 | 721..11 | 3555 | 100 | Minus |
| X | 23542271 | X | 6991864..6992102 | 957..722 | 1045 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:53 has no hits.
FMO02307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:03 Download gff for
FMO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2977-RB | 481..1522 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:53 Download gff for
FMO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RB | 481..1522 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:08 Download gff for
FMO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx7-RB | 481..1522 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:08 Download gff for
FMO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6991780..6992102 | 722..1033 | 95 | <- | Minus |
| X | 6992173..6992883 | 11..721 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:53 Download gff for
FMO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6885813..6886135 | 722..1033 | 95 | <- | Minus |
| arm_X | 6886206..6886916 | 11..721 | 100 | | Minus |
