FMO02308.5prime Sequence
1229 bp (1080 high quality bases) assembled on 2008-05-14
> FMO02308.5prime
CAGTCGACATGGATGTATCCCAGTCAGATGGCCCAACAGAAAATGAGGCT
GGCGGAATGAAGAACATTACACATCAGTTCGAGTTCATGTCTAATAGGTT
GAAGGAGCATATGAAATACAACATCCTCCGTAACGCTGTGTTTTACAAGA
AGATTCCCCTGCAGAAGAAACTAAAACTTGCCCTTGAAAGAAATATCGGT
CCCCATGCCTATATAATAGTTAACGATACAATCTACAAGTGCCAAGTGTT
CGTACTCCGCATCTACTGCAAGCTGTTTACCAACAACCTCAAGCGGGGTG
ACATAGTCAAGTTTCCCAGGGACGCGATGAGCAATGAGTGCTTTGAATTG
GCCTATACCTGGATGACTAATAATGCGATACATTTGCCACGTGACAAGAT
AATAAATTTGCTCGCGGCCGCAAAATGTTTGCAGTGCATTCCCTTGATCA
AGCGCATCTTTGAGTTTCTTAACGACTACCGAACCCATTGCGAACTTTTT
TCATTTAGCTGCTATTTGAAGGCCAAAGATATGGGTATGACCCAGGTAGC
CGACATGATGGTGTCCAGAGTGACCAAGTCCTTCCTGGTACTAGTGTCCA
ATGGACAGTTCATTAAGATGGATATCGACGGCGCGTGCACTCTGCTGAGA
TCGAGACACTTGGCTGTACAAAACGAGATCGAGATTTTTTATTCAGCTCT
GCTCTGGCTAATATCAAACTATGAGATGCGCATAAAATACATTCCACGTG
TTTTGAGCTTGGTAAGATTTCTTATGATTCCAGCCGTATTTATTCTTCAA
TGGACGAGCAATCTTAAAGATCTCCGACCAGAACTTGCGAATGTCCTATG
CCACTTTCTACACAATGCGATGCTGAGCCAATTCGAATATTATACGGAAA
CCTTTCAGTCAGAATCTATAATACGCGGCAATCGGCGCTGGGCTCAGGAT
CACAGTGTCCATATTTATCACTTTTCATGCAAACGGTGACTCCGATCTTC
TCCCAGATGTATTTTTCGCTATCTGCGGCAAATACAAAATTCACCTAAAG
CTTTGTAGCCTCGATTGATAATGAAGGACCAAATGAATATTGAAATTGGT
GATGCCACTGACGTAAACGGATTCATGACTAGAAATTTCCCGCGGAAGAA
TTGAAGACTGGCAAATACCTGCTGGTGGAGTCAGTCTACCGAAAAATATG
GGATGCGCCTCTCTTATGTGGTGAAACGA
FMO02308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1774 | CG10752-RA | 111..1262 | 9..1156 | 5330 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12953863..12954537 | 683..9 | 3375 | 100 | Minus |
| 3L | 28110227 | 3L | 12953250..12953676 | 1105..682 | 1770 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:54 has no hits.
FMO02308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:04 Download gff for
FMO02308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 22..1146 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:25 Download gff for
FMO02308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..1231 | 1..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:34 Download gff for
FMO02308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..1231 | 1..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:34 Download gff for
FMO02308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12953229..12953674 | 684..1127 | 96 | <- | Minus |
| 3L | 12953863..12954541 | 1..683 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:25 Download gff for
FMO02308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12946329..12946774 | 684..1127 | 96 | <- | Minus |
| arm_3L | 12946963..12947641 | 1..683 | 99 | | Minus |
