FMO02309.5prime Sequence
1215 bp (99 high quality bases) assembled on 2008-05-14
> FMO02309.5prime
CAATCCACTGGCTGGACGCGCTATCATCGCACTTTTGGCCCTACTGGGAT
TTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGACCCGGTGAT
CTCGATTGGGGATTTGTGGATGTCAGGATTGGCGCCCACATGTTCTACTG
GCTGTACTACACGACCGCCAATGTCTCCAGTTGCCCGGAGCGTCCGCTGG
CCATTTGGCTCCGAGGAGGGCCAGGTGCCTCCACGACGGGATAGGGAAAC
TTTGAGGAGTTGGGTCCCCTGAATCTCGACGGGCGCTACCGCGACTGGAC
TTGGGTGAAGGATATGAATGTGATGTTCATCGAAAATCCCGTGGGCAGTG
GGTTCAGCTGGCTGGACCGATCTTCTTACTACACCACCAAAAACAATGTG
ATCGCCCTGGATCTCGTTGAACTAATGAAGGGCTTCTACACAAACCACCC
GGAATTCAAGACTGTGCCGCTGCGCATCTTCTGCAAGAGTTAGGGCGGAA
AGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATCAAGCGCGGT
GAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGTAGATCCCTGGACCTC
ACCCATAGACTCTGTGCTCTCATGAGCTCCCTTCCTGCTGCAGTGGGAAT
CGTGGATCACGATGGCCATGAGAGATTGAAGCTTCGGCCCTGAGACTAAA
GACTATGATGACCGCGAGAAGAGGACACATGCCACTTTGCAGTGGAGCTC
CGCTCTGTCTTTGGTGCTGCGCGAGTCCATGGGAGTGGACTTCATAACGA
GAGACCCCAACATTGGTTGATCGTACTTCGTTGATGTCCCAGCTGCCATG
ACTCCGGAGGAGGCATGTATCGCACCCTCGTGATAATTCGATGTGCATGA
GAACGCGACAAATTGCAGGTAGATCATATGTCTTGCACCGGGAACGAAGG
ACCTCTGGAATTCTGCACAGAATGAATAGGGCGCCAGTATTGGACCCCTT
CTTCCCCAGCTGATGGGTGATTCATGATGCAGCTATTGATGTAGACTAAC
TACTAAAACACCAACGGGAATGGAGCTCGTTTCCTCCGGTTGAACTGACC
TGATCTGTGCCGTGCGAACCCGTCACTTGTCATCTCAACAGTATGTCCTA
TAACCATTTAACGGCTTGCAGACGGGACAACAGACGCGTAACATACAGAG
CTCAGATTTGTCCGA
FMO02309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3344-RA | 1480 | CG3344-RA | 92..1006 | 9..916 | 3500 | 92.9 | Plus |
| CG32483-RA | 1382 | CG32483-RA | 112..602 | 134..624 | 625 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 686581..687373 | 860..74 | 2810 | 92.1 | Minus |
| 3L | 28110227 | 3L | 689410..689900 | 624..134 | 625 | 75.2 | Minus |
| 3L | 28110227 | 3L | 687802..687867 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:18 has no hits.
FMO02309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:06 Download gff for
FMO02309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 77..1007 | 1..928 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:28 Download gff for
FMO02309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 87..1017 | 1..928 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:10 Download gff for
FMO02309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 87..1017 | 1..928 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:10 Download gff for
FMO02309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 686581..687372 | 75..860 | 92 | <- | Minus |
| 3L | 687802..687872 | 1..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:28 Download gff for
FMO02309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 686581..687372 | 75..860 | 92 | <- | Minus |
| arm_3L | 687802..687872 | 1..74 | 95 | | Minus |
