FMO02310.5prime Sequence
1233 bp (1060 high quality bases) assembled on 2008-05-14
> FMO02310.5prime
CAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCACCGATCTA
ATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGCCGCAGCTC
GAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGCCGCCATTG
TGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTACTTGACGAA
TCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATCACCGACTA
CCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTTCGACGTCT
TTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGTTGGCAGTG
ATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGCACCCATGC
CGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACTAACCAACA
AGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCTTGATCGCC
GCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCCTTCTTGTG
CAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGACTGTGCTGG
AGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCGACGACAAG
ATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCGGCACGCAG
CACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCACTTTGAGC
ACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGCGTGATCAC
AATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGCATGCTGAT
CAAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATTCTGCATCG
AGTGGGCCCGCCGGATAGCCGAGGAGTACTTCATGCAGACGGACGAGGAG
AGCAGCGCCACCTGCCCATCGTGATGCCGATGTTCGATCGGGCACTGCAG
CATACCAAAGAGCCAGATCGGCTTCATCGAATACATCATACAGGACATGA
TGCACGCCTGGGAGAGCTTCATCGAACTGCCCCACCCTGATCACTACATG
CGATTCACCTACTTCCCAATGGAAAAAGTACGACAACAGGCGTCACACTG
CTGGCGGAATCTGCACCGACCAATCGGGTGTGGACGAGAATGCACTCCAA
ACCAGCATTCAAACATTCTTGTGGGCCGGCGGA
FMO02310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde8-RO | 4895 | CG45019-RO | 2365..3518 | 9..1158 | 5370 | 98.3 | Plus |
| Pde8-RK | 5389 | CG45019-RK | 2032..3185 | 9..1158 | 5370 | 98.3 | Plus |
| Pde8-RI | 5562 | CG45019-RI | 2205..3358 | 9..1158 | 5370 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23677403..23677654 | 166..417 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 23678218..23678489 | 798..1066 | 1230 | 98.5 | Plus |
| 2R | 25286936 | 2R | 23677713..23677938 | 415..640 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 23678001..23678159 | 639..797 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 23677248..23677347 | 68..167 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 23677129..23677189 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:13 has no hits.
FMO02310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:52 Download gff for
FMO02310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5411-RD | 1442..2539 | 1..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:06 Download gff for
FMO02310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RN | 2308..3405 | 1..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:44 Download gff for
FMO02310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RI | 2195..3292 | 1..1094 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:44 Download gff for
FMO02310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23677405..23677653 | 168..416 | 100 | -> | Plus |
| 2R | 23677715..23677937 | 417..639 | 100 | -> | Plus |
| 2R | 23678002..23678159 | 640..797 | 100 | -> | Plus |
| 2R | 23678218..23678488 | 798..1065 | 98 | -> | Plus |
| 2R | 23677119..23677188 | 1..68 | 95 | -> | Plus |
| 2R | 23677249..23677347 | 69..167 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:06 Download gff for
FMO02310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19564642..19564711 | 1..68 | 95 | -> | Plus |
| arm_2R | 19564772..19564870 | 69..167 | 100 | -> | Plus |
| arm_2R | 19564928..19565176 | 168..416 | 100 | -> | Plus |
| arm_2R | 19565238..19565460 | 417..639 | 100 | -> | Plus |
| arm_2R | 19565525..19565682 | 640..797 | 100 | -> | Plus |
| arm_2R | 19565741..19566011 | 798..1065 | 98 | -> | Plus |
