FMO02312.5prime Sequence
955 bp (955 high quality bases) assembled on 2008-05-14
> FMO02312.5prime
CAGTCGACATGATGGGTGGCGGTGGTGGCGTTGCTGGTGCGGGCTTTTCC
GCGGGCGCCAGTGGCCCAATGCTGGGTGCTGGCGGTCACATGCTGATGGG
TGGCCAGGGGCATCAGGTGCATCTGCAGCACCAGACGCTCTTGCCCGTCA
AGATGGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATCAAATGAAA
TTTTACGACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTGAAAGACGG
TACGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGCTGTGACGG
ATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACGAGAACAAG
TTCATCATCGATAAGACGGATACGAACGACGATGGCAAATACAGTTGCGA
GTTTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGTTGTTGTAC
GAGTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGTCGGTGACC
TGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGCCAATGT
AACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGATAATG
GTGTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGGACGACAGA
GGCGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTACGGTGGGAA
CACCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAAGGGCAAAT
TTGCCGCCTTGTGGCCTTTCCTGGGCATCTGTGCTGAGGTGCTGATTCTG
TGCATCATCATTCTCATTTATGAGAAGCGACGCACCAGAGCGAACTGGAG
GAGAGTGATACTGATCCCCAAGAACAGAAAAGAAAAGAGATATTATGATG
CAGCTTTCTAGACCATTCGTTTGGCGCGGCGGGCCAGGTTAGTGGTCATA
ATCAT
FMO02312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg-RG | 8453 | CG31605-RG | 1533..2427 | 8..899 | 4370 | 99.4 | Plus |
| Bsg-RB | 2744 | CG31605-RB | 445..1167 | 156..877 | 3575 | 99.7 | Plus |
| Bsg-RH | 3001 | CG31605-RH | 702..1424 | 156..877 | 3575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8107237..8107448 | 543..754 | 1030 | 99.1 | Plus |
| 2L | 23513712 | 2L | 8106839..8107000 | 274..435 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 8103355..8103503 | 8..156 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 8107747..8107881 | 744..877 | 610 | 98.5 | Plus |
| 2L | 23513712 | 2L | 8105691..8105810 | 156..275 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 8107065..8107173 | 435..543 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:04 has no hits.
FMO02312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:02:54 Download gff for
FMO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31605-RG | 1461..2362 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:24 Download gff for
FMO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RG | 1526..2427 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:37 Download gff for
FMO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RG | 1526..2427 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:37 Download gff for
FMO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8103348..8103503 | 1..156 | 97 | -> | Plus |
| 2L | 8105692..8105809 | 157..274 | 100 | -> | Plus |
| 2L | 8106840..8107000 | 275..435 | 100 | -> | Plus |
| 2L | 8107066..8107173 | 436..543 | 100 | -> | Plus |
| 2L | 8107238..8107438 | 544..744 | 100 | -> | Plus |
| 2L | 8107748..8107881 | 745..877 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:24 Download gff for
FMO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8103348..8103503 | 1..156 | 97 | -> | Plus |
| arm_2L | 8105692..8105809 | 157..274 | 100 | -> | Plus |
| arm_2L | 8106840..8107000 | 275..435 | 100 | -> | Plus |
| arm_2L | 8107066..8107173 | 436..543 | 100 | -> | Plus |
| arm_2L | 8107238..8107438 | 544..744 | 100 | -> | Plus |
| arm_2L | 8107748..8107881 | 745..877 | 98 | == | Plus |
