FMO02313.5prime Sequence
1215 bp (1059 high quality bases) assembled on 2008-05-14
> FMO02313.5prime
CAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCTCGACGCAC
AAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGACGATGCCAG
CGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGACGACTACA
TCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGATCAATCGC
GGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAGAAGTTTCT
AAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTGCGGCTTCG
ACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGAAGAACTTC
ATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTACACAATTAA
GCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGGTGAGGTGC
GGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGATGGGCGTT
GACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAGGCAGAAGT
TGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCTGGTCTATA
TCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGCAAAAGTTC
CAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAACGACCGTTT
CGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAGCCTGGCCG
GCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCTTCAAGGAC
AGCGGCTGGACTGGCGCCCGCGCCTGGGACATGGTCCAGGTGTACGAGAG
CATCTCGGCGGCCGAGAGGCAGCGAATCGAGCGGCTGGAAATGCTGGACG
AGGGTGACTGCTGCTCCAGCTTTTCCAGCACTACTGCCTGGTGGTCGCCT
GGCTGGGCGTGCCTTTCAGAAATAGATATCACCGTCGAAGAGTTAATGTC
CTCCGCTGAACATGAACGCAAGCTTTCTAAACCATTCGTTTGGCGCGCGG
CCCAGGTAGGTGTCAAAATCATATCATATCATAATCATAATTCCCAACTA
GGCTAGGAGAATCTGGTCATGAACTGTGCCTGATTCTCCCAATAAACGCT
CGGCGCTCTAACGGGCGTCTGAACAATCGAATGGAAGGTCTGAGAGCCCA
TCATCGGGAGTCTTC
FMO02313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3793-RA | 1582 | CG3793-RA | 156..1163 | 8..1013 | 4930 | 99.5 | Plus |
| CG3793-RB | 1738 | CG3793-RB | 156..1133 | 8..982 | 4800 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15764781..15765217 | 253..689 | 2155 | 99.5 | Plus |
| 2L | 23513712 | 2L | 15765270..15765554 | 678..961 | 1375 | 99.6 | Plus |
| 2L | 23513712 | 2L | 15764375..15764621 | 8..254 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 260..296 | 113 | 78.4 | Plus |
FMO02313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:11 Download gff for
FMO02313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 140..1153 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:27 Download gff for
FMO02313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..1163 | 1..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:03 Download gff for
FMO02313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..1163 | 1..1013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:03 Download gff for
FMO02313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| 2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| 2L | 15765273..15765577 | 681..982 | 98 | -> | Plus |
| 2L | 15765675..15765695 | 983..1003 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:27 Download gff for
FMO02313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| arm_2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| arm_2L | 15765273..15765577 | 681..982 | 98 | -> | Plus |
| arm_2L | 15765675..15765695 | 983..1003 | 100 | == | Plus |
