FMO02315.5prime Sequence
935 bp (935 high quality bases) assembled on 2008-05-14
> FMO02315.5prime
CAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTCCCAAGAAA
TTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCCGGAGTATC
CGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTTGATCAAGA
TTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGCAATACCGG
GGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGCTTCCGCGG
ACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTCCTCTTGGG
GCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCCAAGGAGGA
AACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCAGCTGCTGA
GTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGTGGTGAAGA
CGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGTACAGGGGC
ATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATCCGTGGCCT
GTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGGAGCCATCC
AGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAATATCGCAAA
CTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCCTTCGCGGC
TGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCAGGTGGTCC
GGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCTGGGACTGC
ATCAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTATAAGGCCTGG
TGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGTCATGCTGATC
TGGGAGAGCTGACCAGCGCAAGCTTTCTAGACCAT
FMO02315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45085-RA | 2926 | CG45085-RA | 668..1579 | 9..917 | 4485 | 99.7 | Plus |
| CG8026-RB | 2926 | CG8026-RB | 668..1579 | 9..917 | 4485 | 99.7 | Plus |
| CG45085-RB | 1941 | CG45085-RB | 668..1478 | 9..818 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9188653..9189008 | 672..317 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 9188017..9188266 | 917..671 | 1100 | 98.8 | Minus |
| 2R | 25286936 | 2R | 9189067..9189224 | 316..159 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 9191276..9191429 | 162..9 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:16 has no hits.
FMO02315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:13 Download gff for
FMO02315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RA | 661..1557 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:08 Download gff for
FMO02315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1579 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:46 Download gff for
FMO02315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1579 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:46 Download gff for
FMO02315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9188017..9188265 | 672..917 | 98 | <- | Minus |
| 2R | 9188654..9189008 | 317..671 | 100 | <- | Minus |
| 2R | 9189067..9189220 | 163..316 | 100 | <- | Minus |
| 2R | 9191276..9191435 | 1..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:08 Download gff for
FMO02315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5075522..5075770 | 672..917 | 98 | <- | Minus |
| arm_2R | 5076159..5076513 | 317..671 | 100 | <- | Minus |
| arm_2R | 5076572..5076725 | 163..316 | 100 | <- | Minus |
| arm_2R | 5078781..5078940 | 1..162 | 97 | | Minus |
