FMO02316.5prime Sequence
1240 bp (1048 high quality bases) assembled on 2008-05-14
> FMO02316.5prime
CAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCCTAGCGGTG
GCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATACATACGCAC
CATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCTCTCCATGC
TCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCGTGATCAAG
ACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGCATGGTGGA
TTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCTGTATAGAG
GTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTTACATAAGC
ACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCTGGGCATCG
AATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGGCCAGACCA
TCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGCTCGGGATG
TCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGCATTAAGTC
ATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGGCAGGGAGA
TAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACACCGCCAGC
CTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTCTATCATCT
CTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTCCCATCTGT
TTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGACAATACTA
ACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCACCGCTTGGA
CTCGATGAGCGTCGCCTTCCGGGGAGCTGTGGCAGGAGGAGAAGCTGATC
TGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAGTCGGCAGCCTTCTC
ATTCAGCATTATTCTAGTTACGAGACGATCAAGCGCATTGCGGTGGACGA
GCAGTACAGCATCAGAATCGCTGGGCAAGCTTTCTAGAACCATTCGGTTG
CGCGCGCGGCCAGGTAAGTGTCATAATCATAAATCAAATCTAATCATAAT
CCAACTAAGCTAAGGAGAATTCTGTCATGACATATGTCTTGAATCTCTCA
CAAAATAAAGCCTGCGCCACCGTAGTCGGTTCCTGAACAATCCGAATGAG
GATTCTGAGAGAGACCTATCTACGTGAATCTACTTTCACT
FMO02316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5805-RB | 2151 | CG5805-RB | 288..1304 | 9..1024 | 4970 | 99.4 | Plus |
| CG5805-RA | 2036 | CG5805-RA | 358..1374 | 9..1024 | 4970 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24785973..24786672 | 708..9 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 24785399..24785591 | 1024..833 | 775 | 96.9 | Minus |
| 3R | 32079331 | 3R | 24785785..24785915 | 838..708 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:51 has no hits.
FMO02316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:14 Download gff for
FMO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 352..1378 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:20 Download gff for
FMO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1379 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:58 Download gff for
FMO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1379 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:58 Download gff for
FMO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24785416..24785587 | 837..1008 | 98 | <- | Minus |
| 3R | 24785787..24785914 | 709..836 | 100 | <- | Minus |
| 3R | 24785973..24786677 | 1..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:20 Download gff for
FMO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20611138..20611309 | 837..1008 | 98 | <- | Minus |
| arm_3R | 20611509..20611636 | 709..836 | 100 | <- | Minus |
| arm_3R | 20611695..20612399 | 1..708 | 99 | | Minus |
