FMO02318.5prime Sequence
1241 bp (1045 high quality bases) assembled on 2008-05-14
> FMO02318.5prime
CAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCGTGTGCCTC
CAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTGCGCAAGTG
CACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTACGACTTGG
ACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGGTTCTGGAT
CTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTTCAGCGATA
CACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTTATCGGTGG
AGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTGATCTTTCG
AATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTGCCGCGACT
GAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAATCTTCAGG
CACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACGTGGCAGGT
TGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAACTCTGGCA
ACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGACAGCCTGG
CGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGCAGTTGAGC
CAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTCGGCGCCAG
TCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCGCGAGTGTC
CACTGCCCTACAATCGAACGATCCATTCGCCAAACATTCGCCAGTTGCCA
GACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTTGGAGCTG
GCTGCTTTGGCGGAGTTTGTTTTGTGCTTTTAATTGTCATCTTCTGCGTG
ATACACTGTAGAGAAACGAGCCCAGCGACGAAAGAGGATGCCCAGAAGCG
AAAGCCGTTTGTGATCTCGCCTAGAAACGCCATCAACACCGTCAGCCGGA
GGACGAGCCTCTGCACTGGTGATATTGCCCGAAAGCAAGCTTTCTAGACA
ATCGTTTGGCGCGGCGGGCCCAGGTAGTGGTCATAATCTTAAATCATATC
ATAATCAATCCAACTAGCTAGGAGATCTGGTCATGACATATGTCGTTGAT
TCACAATAAACGTCCGGCGCGGTACACGACCATTCTGACAATTCCAGATA
GTGGAGATTCTGTCGAGGCTTCTTCTACTCCATGGATCTGA
FMO02318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lapsyn-RA | 1630 | CG15658-RA | 299..1327 | 8..1034 | 4990 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21198226..21198434 | 332..540 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 21197610..21197795 | 8..193 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21198492..21198677 | 541..726 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21198761..21198917 | 726..883 | 740 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21198019..21198165 | 190..336 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 21198975..21199128 | 884..1034 | 515 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:25 has no hits.
FMO02318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:17 Download gff for
FMO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15658-RA | 290..1330 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:27 Download gff for
FMO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1332 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:51 Download gff for
FMO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1332 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:51 Download gff for
FMO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21198762..21198917 | 727..883 | 99 | -> | Plus |
| 2R | 21198975..21199128 | 884..1034 | 96 | == | Plus |
| 2R | 21198230..21198434 | 336..540 | 100 | -> | Plus |
| 2R | 21198492..21198677 | 541..726 | 100 | -> | Plus |
| 2R | 21197605..21197793 | 1..191 | 98 | -> | Plus |
| 2R | 21198021..21198164 | 192..335 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:27 Download gff for
FMO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17085110..17085298 | 1..191 | 98 | -> | Plus |
| arm_2R | 17085526..17085669 | 192..335 | 100 | -> | Plus |
| arm_2R | 17085735..17085939 | 336..540 | 100 | -> | Plus |
| arm_2R | 17085997..17086182 | 541..726 | 100 | -> | Plus |
| arm_2R | 17086267..17086422 | 727..883 | 99 | -> | Plus |
| arm_2R | 17086480..17086633 | 884..1034 | 96 | == | Plus |
