FMO02319.5prime Sequence
1177 bp (1020 high quality bases) assembled on 2008-05-14
> FMO02319.5prime
CAGTCGACATGTTCTGGGTGGACCTGTTCGATTGGATCATGCACAAGGAA
ATGGCTCTGGCCCCCGACACACGTGTCTATGAAAATTGGAAGAGTCCGCC
AATTGATCTCAGTCTGGACATCTACCTGTACAACTGGACGAATCCGGAGG
ATTTCGGCAACCTTTCCACAAAGCCCATTCTGGAGCAGGTGGGTCCTTAT
CGTTTTATCGAGCGACCCGATAAGGTGGACATTCACTGGCATCCAGAAAA
TGCATCCGTCACTTATCGCAGGCGCAGCTTGTTCTACTTTGATGCGGCGG
GCAGTAATGGCAGCCTGGACGATGAGATTACCACGCTTAATGCAGTGGCT
CTGTCTGCAGCCGCCACAGCCAAATATTGGCCACCAGTTAAGCGCTCCCT
TGTCGATGTGGGACTAAAGATGTACGGTGCCGAGATGTCTGTCCAAAAAT
CGATCGATGAGCTGCTCTTCACCGGTTACAATGACGCAATGATCGACGTG
GCCATGGCCATGCCCATTTTTGGTGATGAGGTGAAGGTTCCATTCGATAA
GTTCGGTTGGTTCTATACGCGCAATGGAAGTGCCGATCTTACCGGAGTTT
TTAATGTCTTCACTGGCGCCGATCAACTGGCCAAACTGGGTCAGATGCAC
TCGTGGAATTACCAGGAGAACACTGGATTCTTTGATTCCTATTGCGGTAT
GACCAATGGATCCGCCGGGGAGTTCCAGCCACAGCATCTGAAGCCCGGCG
ATAGTGTTGGTCTATTTACGCCCGATATGTGCCGAACTATTCCGCTGGAT
TATGTGGAAACTGTGGATATTGAAAGGACTGGAAAGTTATAAATTCTCAG
CGGACCACGATCTGTAGATAATGGCACCCAGTATCCTGAGACCTTTGTTT
TGTGGTGGCCAATGTGTTCCGTCGGGTGTGATGAACATCAGTTCCTGTCG
CTTTGGATCTCCTGTTTTTATGTCCTATCACACTTTTTCAACGCCGATCT
ACTACCAGATCAGTAGAGGGCTGAAGTCTACAGAGATCCCGAGTTTTTAT
ATTGGTGGTGCAGCCAGTACTGCATCCTGGAGTGCTGCCGATCCAGTGAA
ATGCTCTGGAGCCATCAGCATTAGCTAACTGGCAATACAGAAGTTTCCCA
CTGTAATGTTCGCAACCGAAAGTAGCA
FMO02319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 5563 | CG12789-RC | 3699..4774 | 8..1072 | 4925 | 98 | Plus |
| santa-maria-RA | 2302 | CG12789-RA | 438..1513 | 8..1072 | 4925 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7446415..7446936 | 874..353 | 2500 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7446996..7447303 | 353..46 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 7446225..7446354 | 999..873 | 500 | 97.7 | Minus |
| 2L | 23513712 | 2L | 7447502..7447546 | 52..8 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:37 has no hits.
FMO02319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:52 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:32 Download gff for
FMO02319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 353..1382 | 1..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:55 Download gff for
FMO02319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 430..1459 | 1..1022 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:55 Download gff for
FMO02319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7446195..7446353 | 874..1026 | 93 | <- | Minus |
| 2L | 7446416..7446935 | 354..873 | 99 | <- | Minus |
| 2L | 7446996..7447301 | 48..353 | 100 | <- | Minus |
| 2L | 7447507..7447549 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:32 Download gff for
FMO02319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7446195..7446353 | 874..1026 | 93 | <- | Minus |
| arm_2L | 7446416..7446935 | 354..873 | 99 | <- | Minus |
| arm_2L | 7446996..7447301 | 48..353 | 100 | <- | Minus |
| arm_2L | 7447507..7447549 | 1..47 | 91 | | Minus |
