FMO02321.5prime Sequence
1224 bp (-16 high quality bases) assembled on 2008-05-14
> FMO02321.5prime
CAATCCACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCACCAGATAAAG
CTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCGCCAGTGAG
CCTTCCCCTGAAACATAAAAATACTTCTGCCACCACAAAGACAACCACGC
TCACCACCCCCCCCTAACTGTATGGCACGGATCTGAGTGAGTACTATGAT
GTGGATGTGGAGAGCCTGCTGGCCCAACTCTCCCCCGAAGAAATAACCCT
ACTGGCCAAAGAAGTGGATCCCGAAGACCACTTCCTGCCGCCCGACCTCC
GCAATAGCTATGAGTGCACCATGGAAGCCACCGGGCCTCTCAATCGCAAG
CAGCTGATCGAGCACATCAATAATCAGGCCATCGAGACCCCGGATCAGCC
GGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAATTGGGTCC
CACCGCCGAGGGATGCCCGCAACATCTGGGCCGAAAAACAAATCGCCATT
GACATGGGCGAGGATTAGAACACGCCCTTAACGATGCCACGCAGGAGGAG
ATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGGA
CCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGCAT
GGCATGGCATTACTAAATCCACTCAGCAGAGCTCTTCCCTATGGATCCGC
CCAACAACACAGATGTGGAGGAATCCTTCGAGCGGGTCTAGGACGATGAC
TCCTATCTGATTGACCTCTACTTGAACAACATTAAGATCATCTCAGACGA
GAAACTCGAGCATCTGTTGCCGGACTGCCTCAGAACGAACATTTGGAAGT
CCTCTCGCTAAAAATGTGGGGCCCTCACCGACTTGACAGCCCTCCTGCTA
GCCGTGGACATGAAGACGAGCTAAACCCTGAGTGTATTAAATGTCTACAC
CACCTTTATCAGTCCGCCCCGTGATTGTCAGATGGTGCAAGCCCTGCTCA
GTTGCGACACATCGAGGAGTTCATGGTCCTCCATCTGTGGTCTTGAGTTC
ATGGGCACAGAATCGGAATGGAAATCCACGACCTGATGAAAAGATTCGTG
CTGCCTGGTCCTTGGCCTGCCACTGGATTTCACGACCACCCGGCCCGACT
GCCTTACCCTTGGATCGTACTATCGTACGAATTTTTGTGAACGCGTGAAC
ACACGTCAGACAACACTTCTCACG
FMO02321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RB | 2508 | CG1539-RB | 160..1288 | 9..1132 | 4090 | 91.6 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 519..1533 | 123..1132 | 3565 | 91 | Plus |
| tmod-RI | 3000 | CG1539-RI | 766..1780 | 123..1132 | 3565 | 91 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 276..786 | 2135 | 95.3 | Plus |
| 3R | 32079331 | 3R | 30571809..30571960 | 123..274 | 640 | 94.7 | Plus |
| 3R | 32079331 | 3R | 30572597..30572834 | 785..1021 | 560 | 88 | Plus |
| 3R | 32079331 | 3R | 30571316..30571429 | 9..122 | 525 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:50 has no hits.
FMO02321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:21 Download gff for
FMO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1539-RB | 151..1175 | 1..1021 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:14 Download gff for
FMO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1175 | 1..1021 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:05 Download gff for
FMO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1175 | 1..1021 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:05 Download gff for
FMO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571809..30571961 | 123..275 | 94 | -> | Plus |
| 3R | 30571307..30571429 | 1..122 | 94 | -> | Plus |
| 3R | 30572023..30572535 | 276..786 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:14 Download gff for
FMO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397029..26397151 | 1..122 | 94 | -> | Plus |
| arm_3R | 26397531..26397683 | 123..275 | 94 | -> | Plus |
| arm_3R | 26397745..26398257 | 276..786 | 95 | -> | Plus |
