FMO02322.5prime Sequence
1211 bp (1028 high quality bases) assembled on 2008-05-14
> FMO02322.5prime
CAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCGATGTGGAG
ACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCTGCGGCCAG
CAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGACTACAGCA
GCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCTTCTTCGCC
AGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTACCAAACCTG
CATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCTGCTGGGCA
TTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAGTACAGACG
TATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGCATTATTCC
TGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTTCGGAAGGC
GGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCGCACTCATA
CTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGTCCATGGTG
GTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAACTTGCGCCT
TGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGGAGCGAAAG
AAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCTGGCATAAT
GGTGGGCAAATGTGGCCAGCGGTTATATCTATGCTGCCACAAATGCTCTG
GTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGATGTACGT
GCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCACACCGGAT
CGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCTGATTCGC
ACCTGCTTTAAGAGGCGCCCCAACTTTGATCGCACAATCATCTGGCTTAC
AATGATTGCCCTTACGATAGTCATTTTCGACATGGAAGGGAGAGAGCACT
GTTAAATTACATGTCGTGCAGATAAATTCACTGGAACATTAAGACTTCAG
TCTATTCAACGCATCCCGCAATCGGATCCGATGGGGCAGCATCGTGGCAT
GTTAAATTGCCCCCGTTCAAAAATTCTATCGTAACATTGCCATGCTCTCC
CTGACTGCCTGGTTCTGGGAGAACACGGACGAGCCCACACACAGTTCTCC
AGTGGCAGATG
FMO02322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30344-RA | 2147 | CG30344-RA | 328..1507 | 9..1178 | 5245 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9145587..9145792 | 9..214 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 9146862..9147046 | 477..661 | 925 | 100 | Plus |
| 2R | 25286936 | 2R | 9147113..9147301 | 660..849 | 900 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9146646..9146797 | 327..478 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 9147363..9147498 | 850..985 | 665 | 99.3 | Plus |
| 2R | 25286936 | 2R | 9145859..9145973 | 213..327 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:01 has no hits.
FMO02322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:51 Download gff for
FMO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 335..1512 | 1..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:28 Download gff for
FMO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 324..1501 | 1..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:36 Download gff for
FMO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 324..1501 | 1..1172 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:36 Download gff for
FMO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9145583..9145791 | 1..213 | 98 | -> | Plus |
| 2R | 9145860..9145972 | 214..326 | 100 | -> | Plus |
| 2R | 9146646..9146796 | 327..477 | 100 | -> | Plus |
| 2R | 9146863..9147046 | 478..661 | 100 | -> | Plus |
| 2R | 9147115..9147301 | 662..849 | 99 | -> | Plus |
| 2R | 9147363..9147498 | 850..986 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:28 Download gff for
FMO02322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5034151..5034301 | 327..477 | 100 | -> | Plus |
| arm_2R | 5034368..5034551 | 478..661 | 100 | -> | Plus |
| arm_2R | 5034620..5034806 | 662..849 | 99 | -> | Plus |
| arm_2R | 5034868..5035003 | 850..986 | 98 | -> | Plus |
| arm_2R | 5033088..5033296 | 1..213 | 98 | -> | Plus |
| arm_2R | 5033365..5033477 | 214..326 | 100 | -> | Plus |
