FMO02323.5prime Sequence
1199 bp (1007 high quality bases) assembled on 2008-05-14
> FMO02323.5prime
CAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCATCTCAGAC
TCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAGAGCCCCAC
CAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGATGTGGAAA
CCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGAAGGCCGAG
AAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTCGGTTACCT
CCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTCTGCCAAGT
GGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTGGCCTAGGC
ATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTACAAGGCCAA
GTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGCCTTCCAGG
ATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACAAATACTCG
GAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTCTTCTCGCA
CGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGCCAAGGGCA
AGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCATGTTCCAG
AAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATCATCCCGAC
CGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGCCTGGTTTG
TGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCTGGCTGGTG
AACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAATTTATCAA
TCCTTCGGAGAACATCTCCGTGGCTATCTTGGACTTTGGAGAGGGATGGC
ATAACTACCATCACGTCTCCCCTGGACTACAGACGCGAGTTGGCAAATAC
TCGCTAACTTCACTACCGCTTCATCGATTTCTCGCAGATCGCTGGGCCTA
CGACCTCAGACGTGTCACGAATATCATAAAGAGCGTGTGAAGCGTACGTG
ACGCACTCCACGCCACGTGGGATGGGCGATGTGACAGCCAGGAAGAATTG
AGGAATGCGCCATACACCAAAAGCGACAGGCTTCGACATGTGCCCGGCCA
GTAGTCATACCTAATACTAATCATATCTATATCCACACATGACCTATAG
FMO02323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat1-RD | 1934 | CG5887-RD | 106..1202 | 7..1083 | 4940 | 97.8 | Plus |
Desat1-RB | 1978 | CG5887-RB | 150..1246 | 7..1083 | 4940 | 97.8 | Plus |
Desat1-RE | 1956 | CG5887-RE | 128..1224 | 7..1083 | 4940 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12445976..12446314 | 317..655 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12444807..12445118 | 7..318 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 12446376..12446561 | 656..841 | 930 | 100 | Plus |
3R | 32079331 | 3R | 12436763..12437064 | 348..649 | 865 | 85.8 | Plus |
3R | 32079331 | 3R | 12446623..12446703 | 842..922 | 375 | 97.5 | Plus |
3L | 28110227 | 3L | 11023798..11024158 | 355..715 | 350 | 73.1 | Plus |
3R | 32079331 | 3R | 30186709..30186806 | 562..465 | 250 | 83.7 | Minus |
3R | 32079331 | 3R | 13282904..13283032 | 474..602 | 225 | 78.3 | Plus |
3R | 32079331 | 3R | 30197375..30197449 | 563..489 | 225 | 86.7 | Minus |
3R | 32079331 | 3R | 12437277..12437356 | 744..823 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:31 has no hits.
FMO02323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:08 Download gff for
FMO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5887-RE | 122..1232 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:33 Download gff for
FMO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat1-RE | 122..1232 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:18 Download gff for
FMO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat1-RE | 122..1232 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:18 Download gff for
FMO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12444801..12445118 | 1..318 | 98 | -> | Plus |
3R | 12445978..12446314 | 319..655 | 100 | -> | Plus |
3R | 12446376..12446561 | 656..841 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:33 Download gff for
FMO02323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8270523..8270840 | 1..318 | 98 | -> | Plus |
arm_3R | 8271700..8272036 | 319..655 | 100 | -> | Plus |
arm_3R | 8272098..8272283 | 656..841 | 100 | -> | Plus |