Clone FMO02323 Report

Search the DGRC for FMO02323

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:23
Well:23
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdesat1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02323.5prime Sequence

1199 bp (1007 high quality bases) assembled on 2008-05-14

> FMO02323.5prime
CAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCATCTCAGAC
TCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAGAGCCCCAC
CAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGATGTGGAAA
CCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGAAGGCCGAG
AAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTCGGTTACCT
CCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTCTGCCAAGT
GGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTGGCCTAGGC
ATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTACAAGGCCAA
GTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGCCTTCCAGG
ATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACAAATACTCG
GAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTCTTCTCGCA
CGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGCCAAGGGCA
AGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCATGTTCCAG
AAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATCATCCCGAC
CGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGCCTGGTTTG
TGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCTGGCTGGTG
AACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAATTTATCAA
TCCTTCGGAGAACATCTCCGTGGCTATCTTGGACTTTGGAGAGGGATGGC
ATAACTACCATCACGTCTCCCCTGGACTACAGACGCGAGTTGGCAAATAC
TCGCTAACTTCACTACCGCTTCATCGATTTCTCGCAGATCGCTGGGCCTA
CGACCTCAGACGTGTCACGAATATCATAAAGAGCGTGTGAAGCGTACGTG
ACGCACTCCACGCCACGTGGGATGGGCGATGTGACAGCCAGGAAGAATTG
AGGAATGCGCCATACACCAAAAGCGACAGGCTTCGACATGTGCCCGGCCA
GTAGTCATACCTAATACTAATCATATCTATATCCACACATGACCTATAG

FMO02323.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 106..1202 7..1083 4940 97.8 Plus
Desat1-RB 1978 CG5887-RB 150..1246 7..1083 4940 97.8 Plus
Desat1-RE 1956 CG5887-RE 128..1224 7..1083 4940 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 317..655 1695 100 Plus
3R 32079331 3R 12444807..12445118 7..318 1560 100 Plus
3R 32079331 3R 12446376..12446561 656..841 930 100 Plus
3R 32079331 3R 12436763..12437064 348..649 865 85.8 Plus
3R 32079331 3R 12446623..12446703 842..922 375 97.5 Plus
3L 28110227 3L 11023798..11024158 355..715 350 73.1 Plus
3R 32079331 3R 30186709..30186806 562..465 250 83.7 Minus
3R 32079331 3R 13282904..13283032 474..602 225 78.3 Plus
3R 32079331 3R 30197375..30197449 563..489 225 86.7 Minus
3R 32079331 3R 12437277..12437356 744..823 205 83.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:45:31 has no hits.

FMO02323.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:08 Download gff for FMO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-RE 122..1232 1..1089 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:33 Download gff for FMO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 122..1232 1..1089 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:18 Download gff for FMO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 122..1232 1..1089 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:18 Download gff for FMO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12444801..12445118 1..318 98 -> Plus
3R 12445978..12446314 319..655 100 -> Plus
3R 12446376..12446561 656..841 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:33 Download gff for FMO02323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8270523..8270840 1..318 98 -> Plus
arm_3R 8271700..8272036 319..655 100 -> Plus
arm_3R 8272098..8272283 656..841 100 -> Plus