FMO02325.5prime Sequence
1228 bp (1051 high quality bases) assembled on 2008-05-14
> FMO02325.5prime
CAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACTTTTTTAAA
CACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAACTTTTGGA
CAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCATCAGCGACA
TGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGATGGAGACG
GGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCAGGAGCCTT
CCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACCCGCGGTGC
GCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTGGCAATGAG
CCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGACTCTGTGGT
GTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAACTACCACA
TCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGATCGGGAACT
CACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGCGTTATAAC
GGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAGTGGCGGCA
TTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATATTGAGCCC
AAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAATCCCCACGA
AGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTGGTACTTCG
ATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGGAAAACAGC
AAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCTGAACCAGA
CTCCACCACCACACCCACCCGCAGCACCAGCTTCATCCGCATCCAGTCTG
CCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATGTGTCGAG
TAATTCCTGCGCCACCAGCAGCGAAATATGCACGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCCCGGGCCCAGGTAAGTGTCAAAATCATAATCATATCA
TATCATATCACAACTAGCCTAGAGAATCCTGTCATGACTATGCTTGAATT
CTTCACCACAAATAAAAACGCCTGCGGCAACGAACGATTCTGAAACATTC
CGATTGGATCTGGAATCATAATACTGGAATCCTTTACACAGGAGATTCAC
AGGCAGAGACTTCGTATATAATATCAAG
FMO02325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hph-RA | 2337 | CG44015-RA | 602..1576 | 9..984 | 4855 | 99.9 | Plus |
| Hph-RD | 3171 | CG44015-RD | 1085..1962 | 106..984 | 4370 | 99.9 | Plus |
| Hph-RC | 2496 | CG44015-RC | 1085..1962 | 106..984 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5267461..5267837 | 607..984 | 1840 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5266752..5267032 | 106..386 | 1405 | 100 | Plus |
| 3R | 32079331 | 3R | 5267262..5267402 | 467..607 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 5265540..5265637 | 9..106 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 5267117..5267202 | 383..468 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:39 has no hits.
FMO02325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:26 Download gff for
FMO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31543-RA | 590..1576 | 1..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:36 Download gff for
FMO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RA | 593..1579 | 1..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:01 Download gff for
FMO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hph-RA | 593..1579 | 1..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:01 Download gff for
FMO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5265531..5265637 | 1..106 | 96 | -> | Plus |
| 3R | 5266753..5267032 | 107..386 | 100 | -> | Plus |
| 3R | 5267121..5267201 | 387..467 | 100 | -> | Plus |
| 3R | 5267263..5267402 | 468..607 | 100 | -> | Plus |
| 3R | 5267462..5267840 | 608..988 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:36 Download gff for
FMO02325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1091253..1091359 | 1..106 | 96 | -> | Plus |
| arm_3R | 1092475..1092754 | 107..386 | 100 | -> | Plus |
| arm_3R | 1092843..1092923 | 387..467 | 100 | -> | Plus |
| arm_3R | 1092985..1093124 | 468..607 | 100 | -> | Plus |
| arm_3R | 1093184..1093562 | 608..988 | 99 | == | Plus |
