FMO02328.5prime Sequence
1249 bp (1071 high quality bases) assembled on 2008-05-14
> FMO02328.5prime
CAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTCTCGAGAAA
CTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCACAAAAAACA
GCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTTGTCGCAAA
CCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGGAACTCAAG
CACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGACAAAAATAT
TTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGCTTTTATAC
GAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTTTGCGCCAA
TTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCCCACTTCGA
CCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAATGTGTCCC
TGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAGGCGAAATC
AATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAGATTGTGCG
CAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGGGGTCATCC
TCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAACCATTGAG
GAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTGCCACCAAA
CGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCTTTTGGCCC
ACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGCATCCCTTT
CTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAGGCCATTGA
TTTGGTCACGCAAGCATGCGCATACGATGAGAAACACAATTACAAGGAGC
TTACTATCTGTACTGCAGTGCCCTGCAGTATTTTGTGCCGCTATCACGGA
GGAGACGGACGCCACAAGCGGCTGGCATTGCGCAATCGTGCCTTGTCCTA
CACAAGCGCGCCGAGGAATCAGATTGCATAATCGAGGACGAATACAGAAT
GTTGGCTGAACGTCAACGGCAGGCGGCTACACCTGCCAAGCTAAACAAGA
TCATCTTCAGCTACCCAAGGTGCCCGCTTGCGCAACCAGCAGCTGCGGTG
TTGCAAATGCTGAACCGGATTCCGCTAACGAGCAAAGTGCCTTCGGAAAT
TCTAGATCTCGCTCCATTAAGAAATGTGGCTCGTCTCGTAAATTACGGA
FMO02328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8866-RB | 2113 | CG8866-RB | 116..1293 | 7..1173 | 5430 | 98.2 | Plus |
| CG8866-RA | 1684 | CG8866-RA | 116..1293 | 7..1173 | 5430 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9332994..9333661 | 1128..469 | 2820 | 97.9 | Minus |
| 3R | 32079331 | 3R | 9333719..9333945 | 471..245 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 9334294..9334442 | 244..96 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9334511..9334599 | 95..7 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:19 has no hits.
FMO02328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:29 Download gff for
FMO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RB | 109..1298 | 1..1177 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:08 Download gff for
FMO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RA | 109..1298 | 1..1177 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:06 Download gff for
FMO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RA | 109..1298 | 1..1177 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:06 Download gff for
FMO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9334294..9334442 | 96..244 | 100 | <- | Minus |
| 3R | 9334511..9334601 | 1..95 | 95 | | Minus |
| 3R | 9333004..9333660 | 470..1117 | 98 | <- | Minus |
| 3R | 9333721..9333945 | 245..469 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:08 Download gff for
FMO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5160016..5160164 | 96..244 | 100 | <- | Minus |
| arm_3R | 5160233..5160323 | 1..95 | 95 | | Minus |
| arm_3R | 5158726..5159382 | 470..1117 | 98 | <- | Minus |
| arm_3R | 5159443..5159667 | 245..469 | 100 | <- | Minus |
