FMO02331.5prime Sequence
1220 bp (1036 high quality bases) assembled on 2008-05-14
> FMO02331.5prime
CAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCGCGGGTCTT
TGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACTGTGTTCGA
GCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGCAACAGGGG
CGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACCTACGAACC
AACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATCGGGGCAAA
CGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCTTAACCAAT
ACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATAGCTATGTG
ATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTCAAAGACTT
GGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTTGGTGGCCA
ATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATATGGAAAGG
TTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGGGAGGTTTT
CGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGGCATGGACC
TGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAAGTCACCAC
TTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAGCAGAAACC
CGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGACGGATCGT
ACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGTACGCCTTT
CCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAACTACGTCCA
GGAGCTGTACAAGCAGTGCATCAACATCAGAACCCATCCATGGCTCTGAT
CGGACTGCCGTTTTACGTTTGTGCCGCCCAATGATGGACATCCAGCGAGG
TTCATCATGAGCTACTACACGGATCCACGAGTTGCCGTCCACGGAGGATA
TGCTCAGGACACCGCGATAGGATGGGCAAACTGGTGGGCGGAGGACTAAG
AAAAACGCATGCCCACATTGCTGGGTTCCCAGCAATCGACTATTTCACGG
AACTTGGTCGCAAACTGCAGGATAAGAACATCAAGCCTTGTGATAACAAT
TGCCAACGAAGACGACAGTGCTTCAATAGAATTGTCTCACACTTCTCGCG
GAGAGAACAAATTTTGTCTG
FMO02331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmo-1-RA | 1454 | CG3006-RA | 105..1301 | 9..1195 | 5305 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23963772..23964310 | 553..1085 | 2135 | 96.5 | Plus |
| 2R | 25286936 | 2R | 23963306..23963496 | 196..386 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 23963060..23963247 | 9..196 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 23963542..23963721 | 380..559 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:46 has no hits.
FMO02331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:53 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:02 Download gff for
FMO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmo-1-RA | 98..1265 | 1..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:08 Download gff for
FMO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmo-1-RA | 98..1265 | 1..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08 Download gff for
FMO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23963053..23963247 | 1..196 | 97 | -> | Plus |
| 2R | 23963307..23963493 | 197..383 | 100 | -> | Plus |
| 2R | 23963546..23963717 | 384..555 | 100 | -> | Plus |
| 2R | 23963775..23964310 | 556..1084 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:02 Download gff for
FMO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19850576..19850770 | 1..196 | 97 | -> | Plus |
| arm_2R | 19850830..19851016 | 197..383 | 100 | -> | Plus |
| arm_2R | 19851069..19851240 | 384..555 | 100 | -> | Plus |
| arm_2R | 19851298..19851833 | 556..1084 | 97 | -> | Plus |
