FMO02334.5prime Sequence
1201 bp (1010 high quality bases) assembled on 2008-05-14
> FMO02334.5prime
CAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTATTGACTTTG
GCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGACGCGGATT
TCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGACAGTGTGT
GGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGTATGTGAAG
AGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCGGCTGTTTT
GATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGATTTCGCCA
GTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATCCCCTGTCG
GCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATGAGGCACAT
GTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTTCAGCACAT
CCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGGAGCTGCCG
GAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAAAACTATGC
CATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAATAGCTTCG
AAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCAGAGCCAAT
AATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTGCCCTCGAT
AGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGGCCTGGCCA
TGTTGCAGATTGTCAAGGAAACCGTTGAGTATCGCGAGAAACATGGAATA
GTGCGCAAGGATCTGTTGCAGTTGCTCATTCAGCTGAGGAATACCGGCAA
GATAGACGAGAATGACGAGAAGTCCTTTAGCATTCAGAAGACACCCGGAT
GGTCATATTAAAACCATATCCTTGGAGGCCATCACCGCTCATGCTTTTAT
ATTCTACATCGCTGGTCAGAGACCACCGGATCGACTGCAGCCTTTACCAT
CTACGAGCTGGCTCAGTATCTGAGCTACTGAAAGCGCCTGCAGAATGAAG
TGGACGAAGACCTGACAAAAACGACGGAAAGAATCACTACGATCCCTGAA
CTAGATGGAATTCTGACTGGTGGTGCAGAAACACTCGCAATTCGCTGCAT
CTGAATCTGATGCCCGGAACATCCAGATACGCAACAACACGGCTATTCCG
G
FMO02334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d4-RA | 1872 | CG12800-RA | 72..1183 | 4..1112 | 5230 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22698396..22699085 | 9..698 | 3450 | 100 | Plus |
| 3R | 32079331 | 3R | 22699142..22699341 | 698..897 | 1000 | 100 | Plus |
| 3R | 32079331 | 3R | 22699404..22699618 | 901..1112 | 650 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:12 has no hits.
FMO02334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:23 Download gff for
FMO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12800-RA | 64..1182 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:32 Download gff for
FMO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d4-RA | 70..1188 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:43 Download gff for
FMO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d4-RA | 70..1188 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:43 Download gff for
FMO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22698388..22699084 | 1..697 | 99 | -> | Plus |
| 3R | 22699142..22699344 | 698..901 | 99 | -> | Plus |
| 3R | 22699405..22699623 | 902..1120 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:32 Download gff for
FMO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18524110..18524806 | 1..697 | 99 | -> | Plus |
| arm_3R | 18524864..18525066 | 698..901 | 99 | -> | Plus |
| arm_3R | 18525127..18525345 | 902..1120 | 92 | | Plus |
