FMO02336.5prime Sequence
1215 bp (1029 high quality bases) assembled on 2008-05-14
> FMO02336.5prime
CAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGCGCGCCAAG
CGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAGGCTCAGGT
GGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCTGTCCGAGT
CGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCACGGCTGGC
GCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGCCATGCCCA
TGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGCTCCAGCTC
AGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGACGAACAAC
TACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCTCCTCGTCG
CAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGCAGCGGAAA
TGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGACGAAGCCC
GATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCGTTTGGCCG
ACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCAGCTGCCCA
GCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGATCGCTGCTG
GGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGCTTCCGTGC
ACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCATTTGTGCA
AGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACATCCATCTG
CTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAGCTGGCCTT
CACGGAACTGGCGCACGAGAAGAAAGGCGCCGTTGCCCAACTTTCAGCGG
GCGCAGCAGCCGGGTTCACCACCAGGGAAACAGTGCCACCAACCAGCAGA
TCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCCGCGAGTCG
GCAGTGCACGAGCGCTGGCGCGCAAGCTTTCTAGACAATTCGTTTGGCGG
CGCGGTCCAGGTAGGTGGTTCATATCTATCATATCATAATCATAATCCCA
CCTAGCCTAGAGATTCTGTCATGACTATGCCTTGGATCTACAATAAAACG
CCGGGCGGCACCGAAGCGTTCTGTACAATTCCAGAAGTGTGAGGATGATT
CTTCTGTGTAAGGCT
FMO02336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6470-RB | 1532 | CG6470-RB | 155..1169 | 5..1021 | 4975 | 99.5 | Plus |
| CG6470-RA | 1475 | CG6470-RA | 98..1112 | 5..1021 | 4975 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18513192..18513829 | 1021..382 | 3005 | 99.4 | Minus |
| X | 23542271 | X | 18514337..18514713 | 381..5 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:14 has no hits.
FMO02336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:25 Download gff for
FMO02336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6470-RA | 94..1112 | 1..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:34 Download gff for
FMO02336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6470-RA | 94..1112 | 1..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:54 Download gff for
FMO02336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6470-RA | 94..1112 | 1..1021 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:54 Download gff for
FMO02336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18514337..18514715 | 1..381 | 99 | | Minus |
| X | 18513192..18513829 | 382..1021 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:34 Download gff for
FMO02336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18407225..18407862 | 382..1021 | 99 | <- | Minus |
| arm_X | 18408370..18408748 | 1..381 | 99 | | Minus |
