FMO02338.5prime Sequence
1214 bp (1064 high quality bases) assembled on 2008-05-14
> FMO02338.5prime
CAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGAGCCGA
AGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGGAACGGGAC
CGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGCGATTCAGA
ACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGGCGACCATC
GCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGGAGCGGGAT
CGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGACCGTAGGCG
TTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCATCATCATC
ATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTGCAGCATCA
GTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGACTCTCGATC
CGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCGCCATCAGT
CGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCCGCTCCAGA
TCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCTGTGGCCGG
ATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATCAACGGCAA
CTAATGCAACAGCAGCGGCGAGGGTTGCAGCGGCCGCTCTGGTAGCTGCC
AATGCAACAGCCGCAGCCATGCAGCCGGTTCATCCGGCGGCGGTGGCGGC
GGTCTCCTGCCCACGCCCAACTATGCGCCCAAGAATACCCTCGCTGATGT
CCTTGGAGCTGAACACACCAGCGGCAGCAGCACCAGTCGCGGAACCCAAT
CCAGCTGCCCAGGTTACATACAATCGAGCATCATCATGCCAATCAGCCGG
AACACAGCGAAGCGCAGCACATGTGGACCTCCAGAAAGGCCGCGAATACA
TGCGCCGAACAGAA
FMO02338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-RB | 1814 | CG6340-RB | 102..1236 | 9..1144 | 5490 | 99.2 | Plus |
| CG6340-RE | 1831 | CG6340-RE | 102..1253 | 9..1144 | 5310 | 97.8 | Plus |
| CG6340-RF | 2177 | CG6340-RF | 750..1599 | 294..1144 | 4065 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15485330..15486002 | 439..1112 | 3195 | 99.3 | Plus |
| X | 23542271 | X | 15483198..15483421 | 71..294 | 1120 | 100 | Plus |
| X | 23542271 | X | 15485120..15485269 | 292..441 | 750 | 100 | Plus |
| X | 23542271 | X | 15482475..15482538 | 9..72 | 320 | 100 | Plus |
| X | 23542271 | X | 15482855..15482974 | 86..205 | 305 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:22 has no hits.
FMO02338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:39 Download gff for
FMO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 93..1235 | 1..1147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:13 Download gff for
FMO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 96..1238 | 1..1147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:50 Download gff for
FMO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 96..1238 | 1..1147 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:50 Download gff for
FMO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15482469..15482537 | 1..71 | 94 | -> | Plus |
| X | 15483199..15483420 | 72..293 | 100 | -> | Plus |
| X | 15485122..15485268 | 294..440 | 100 | -> | Plus |
| X | 15485332..15486036 | 441..1147 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:13 Download gff for
FMO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15377232..15377453 | 72..293 | 100 | -> | Plus |
| arm_X | 15376502..15376570 | 1..71 | 94 | -> | Plus |
| arm_X | 15379155..15379301 | 294..440 | 100 | -> | Plus |
| arm_X | 15379365..15380069 | 441..1147 | 98 | | Plus |
