FMO02339.5prime Sequence
1211 bp (1043 high quality bases) assembled on 2008-05-14
> FMO02339.5prime
CAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTCCAGTGTCG
ACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATGCTACCGCT
CTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCCTTTCTCGT
ACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACACACAGAGG
ATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGGGTGCGGGT
CTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGCCCGCCAAC
TCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCGTCGGCGTG
TGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTTATGAATGG
ATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGATGAGATCG
TTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGGAGCACAAA
ATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGCGGAGTCAA
CGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGCCACGGAAC
GCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCGTGAAGGAC
TACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCAGCCAAGGA
GCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCAGAACAAGA
TGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAGTCAAGGTT
GACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATCGATGCCTT
CCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAACGAGTCCA
GGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGATGGCTCCGTA
AACGGTGACGATCCAGACGCACAGACGACTTAGACTCTGAGGATGAGTAA
ATGGAGCTGCCACCAGACTACGGGTCTGGTAGTGCCGTATCCCTTAGTCG
AAACAAGCGCCTGATAGGTGATGCCTCAGCTAACCTCAATACTCGGAGCA
CTAGCATAAGGATGTCGTAACGAGCGACAGCGAGCTAGCTTCCGACCTGT
GGGCGCGGCGATAAGGTCTATCTTAACCTATACTAATCCTATCCCACACT
GTGCCTATGGA
FMO02339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 405..1539 | 9..1128 | 5255 | 98.2 | Plus |
Cct1-RF | 2754 | CG1049-RF | 794..1540 | 126..872 | 1755 | 82.3 | Plus |
Cct1-RE | 2564 | CG1049-RE | 872..1618 | 126..872 | 1755 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1555071 | 445..1053 | 2855 | 98.9 | Plus |
3L | 28110227 | 3L | 1554078..1554401 | 123..446 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 1551863..1552290 | 445..872 | 1045 | 82.9 | Plus |
3L | 28110227 | 3L | 1551481..1551801 | 126..446 | 720 | 81.6 | Plus |
3L | 28110227 | 3L | 1553897..1554010 | 9..122 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:56 has no hits.
FMO02339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:40 Download gff for
FMO02339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18330-RA | 400..1548 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:09 Download gff for
FMO02339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 400..1548 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:13 Download gff for
FMO02339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 400..1548 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:13 Download gff for
FMO02339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1554078..1554401 | 123..446 | 100 | -> | Plus |
3L | 1553892..1554010 | 1..122 | 96 | -> | Plus |
3L | 1554461..1555144 | 447..1116 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:09 Download gff for
FMO02339.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1553892..1554010 | 1..122 | 96 | -> | Plus |
arm_3L | 1554078..1554401 | 123..446 | 100 | -> | Plus |
arm_3L | 1554461..1555144 | 447..1116 | 97 | -> | Plus |