Clone FMO02339 Report

Search the DGRC for FMO02339

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:23
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCct2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02339.5prime Sequence

1211 bp (1043 high quality bases) assembled on 2008-05-14

> FMO02339.5prime
CAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTCCAGTGTCG
ACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATGCTACCGCT
CTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCCTTTCTCGT
ACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACACACAGAGG
ATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGGGTGCGGGT
CTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGCCCGCCAAC
TCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCGTCGGCGTG
TGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTTATGAATGG
ATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGATGAGATCG
TTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGGAGCACAAA
ATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGCGGAGTCAA
CGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGCCACGGAAC
GCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCGTGAAGGAC
TACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCAGCCAAGGA
GCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCAGAACAAGA
TGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAGTCAAGGTT
GACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATCGATGCCTT
CCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAACGAGTCCA
GGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGATGGCTCCGTA
AACGGTGACGATCCAGACGCACAGACGACTTAGACTCTGAGGATGAGTAA
ATGGAGCTGCCACCAGACTACGGGTCTGGTAGTGCCGTATCCCTTAGTCG
AAACAAGCGCCTGATAGGTGATGCCTCAGCTAACCTCAATACTCGGAGCA
CTAGCATAAGGATGTCGTAACGAGCGACAGCGAGCTAGCTTCCGACCTGT
GGGCGCGGCGATAAGGTCTATCTTAACCTATACTAATCCTATCCCACACT
GTGCCTATGGA

FMO02339.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 405..1539 9..1128 5255 98.2 Plus
Cct1-RF 2754 CG1049-RF 794..1540 126..872 1755 82.3 Plus
Cct1-RE 2564 CG1049-RE 872..1618 126..872 1755 82.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555071 445..1053 2855 98.9 Plus
3L 28110227 3L 1554078..1554401 123..446 1620 100 Plus
3L 28110227 3L 1551863..1552290 445..872 1045 82.9 Plus
3L 28110227 3L 1551481..1551801 126..446 720 81.6 Plus
3L 28110227 3L 1553897..1554010 9..122 570 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:26:56 has no hits.

FMO02339.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:40 Download gff for FMO02339.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18330-RA 400..1548 1..1140 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:09 Download gff for FMO02339.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 400..1548 1..1140 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:13 Download gff for FMO02339.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 400..1548 1..1140 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:13 Download gff for FMO02339.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1554078..1554401 123..446 100 -> Plus
3L 1553892..1554010 1..122 96 -> Plus
3L 1554461..1555144 447..1116 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:09 Download gff for FMO02339.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553892..1554010 1..122 96 -> Plus
arm_3L 1554078..1554401 123..446 100 -> Plus
arm_3L 1554461..1555144 447..1116 97 -> Plus