FMO02340.5prime Sequence
1210 bp (1035 high quality bases) assembled on 2008-05-14
> FMO02340.5prime
CAGTCGACATGCAGGTCTTCGATAACAATATGCGCCGTGCCTCGCGACGC
GCCTCCTTGCGACGAGGATCCATATCGGCACTGCCGCAGAAGTCGCACGA
GATTCCCTGGGACATATTCGAGCGACTATTCATGCCCTTCCTGTTCTGCC
AGGCGGCGGCCATTGTCACATCGCACCTGCTCCACGCCCTGGACATCTCG
AGCATCTCGACCTTCGCCGTGTTCGTCTGGTTCGCTCTGGCCACCGTGGG
AGCCGTGCTCTTCTATCACTTCGTCAAGGTTTCGGCTTCGGGCAAGGGCG
TGCTAATCACTGGCTGCGAGGCTCCACTGGCCTGGTACTTGGCCAAGAAA
CTGGACGACCTGGGCTTCACCGTTTACGCAGGATTCAACACGCCCATCGA
GGAGTCGGACGAGGCCAAGATTCTCAAGGAGGTGACCTCGGGGCGCATGA
AGCTGCTGCACTTGGACGTCACGTCGGAGAAAACCATCCTGGAAGCTGCC
CGCTATGTGTCGCAGCACTTACCCCACGGCGCCGAAGGATTGTGGTCTGT
GGTGCACTGCGCCCACTGGATAGCTTTGGGTGAACTCGAGTGGATTCCAT
TTGCGGTGCTTCGCAAGAGCTTGGACCTCAACCTTTTGGGTTCCGCTCGG
CTAACACAAATCTTCCTGCCCCTGGTTCGCCGTGCCCATGGTCGCGTCGT
TTTCCTGACCTCCGGCCTGAATCGTGTGCCATCTCCCGTCCGGGGAATCC
AGTGTGCCACCCAAGCGGCCGTGGATTGCTTTGCCGCCTGTCTGCGCCAG
GAGATGCGCACCCGGGGAGTGGACGTGTCCGTGGTGGCTGCCGGTGAATT
TGCACCCGGCAACGGCTGGCTGAACGAGACCGAGCTGCGTGACCAGGCCA
AGCAAATGTGGAACCAGCTTTCCTCGGAGCAGAGAAGACCTACGCCGAGG
ATTACTACGAGCGGCCATGACATCGGTGGAGAAGTATTCCCCGCCAGCGG
CGATATCAGCCACGCTGGCGCGTCTCATCGAATGCCGTGACAGGACTCCC
CATGGTCCGCTACACCCCAGTGAAATCAGCGAAGCGACTGCGATCTTCTT
AGCGAACCCTGCTCTCTTTCTACGAATCGCTGTAACGGGACAGAAAAGTC
GCTCTCACCAAGCTTTCTGAACATTGTTGAGCCCGCGGCCAGGTAGAGGT
GGTCAATAAC
FMO02340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-RA | 1708 | CG8888-RA | 225..1376 | 8..1145 | 5125 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12065689..12065947 | 897..639 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 12077051..12077299 | 280..32 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 12066494..12066702 | 485..277 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 12066006..12066161 | 641..486 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 12065136..12065233 | 989..894 | 375 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:14 has no hits.
FMO02340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:57 Download gff for
FMO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 216..1379 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:33 Download gff for
FMO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 218..1381 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:56 Download gff for
FMO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 218..1381 | 1..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:56 Download gff for
FMO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12066008..12066161 | 486..639 | 100 | <- | Minus |
| 2R | 12065690..12065946 | 640..896 | 100 | <- | Minus |
| 2R | 12066494..12066700 | 279..485 | 100 | <- | Minus |
| 2R | 12077053..12077298 | 33..278 | 100 | <- | Minus |
| 2R | 12065129..12065230 | 897..997 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:33 Download gff for
FMO02340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7952634..7952735 | 897..997 | 95 | <- | Minus |
| arm_2R | 7953195..7953451 | 640..896 | 100 | <- | Minus |
| arm_2R | 7953513..7953666 | 486..639 | 100 | <- | Minus |
| arm_2R | 7953999..7954205 | 279..485 | 100 | <- | Minus |
| arm_2R | 7964558..7964803 | 33..278 | 100 | <- | Minus |
