FMO02342.5prime Sequence
1221 bp (1027 high quality bases) assembled on 2008-05-14
> FMO02342.5prime
CAGTCGACATGGATAATTGGAATGTTTTGGCAGCGCAAACCTCCTCGCAG
GCCATCGGACTCCACGACTCTGGCGTGGTGAAGACCCGACTGACCATTGA
GAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGTATCTGTCGCACC
GCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGGCGGCAGATTGCA
TACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACCGGAGGTCTCCGG
ACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGATCTCGGTGAGAT
TCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAGCTGATCACGCAC
ACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTTGACCCACATGCT
GCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCAGCGAGATGCAGG
CCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTCTCGGAGGTGATC
TTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCATCAACGGCCTGGA
GGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAGG
AGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCCAAT
TTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGATGACTCGCACAT
CGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCCTGGCCGTCAACT
TCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTGATCCAGCGTTCC
AAGCGCCTCACCTGCCTGCTCATGAACGGCACCAGCCTGAAGTCGGAGTT
CGTCATGCAGGCCGAGTGGGACAAGTGCGCCCTGCAGAGCTGGACATCAC
GGCCACCGATCTTTCGACCGAATGCCTCGTGGACATGCTGAGCAGATCCC
CAGCCTCAAGTTCCTCTCAGCCGCAGATCATGGCTTCAACGACAGCGTTC
TCAAGCAGTGATGATCGGGCACCACAGGTCCCCTCATTTCCTGGACTTGA
CTCCTCGGGACAAATTCTCGGATGAGGGCTGCTAGTTTACAGGCCAGGTC
ATACACCTGAACCCTGCTGTCTCCCGGCAATGCCCACATTCCCGAACAGC
TGTGGATGGAACTCTGCCTGTCGGAGTGAGAATCATTGTTGATGGCACAC
GCTAGAAAGAACTGTGGCTGC
FMO02342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 371..1538 | 8..1158 | 5155 | 97.1 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 494..1661 | 8..1158 | 5155 | 97.1 | Plus |
| CG2010-RA | 1910 | CG2010-RA | 233..1316 | 92..1158 | 4735 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29497984 | 416..1010 | 2785 | 99.2 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 92..417 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29495717..29495801 | 8..92 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:43 has no hits.
FMO02342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:43 Download gff for
FMO02342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 464..1554 | 1..1079 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:55 Download gff for
FMO02342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1574 | 1..1079 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:14 Download gff for
FMO02342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1574 | 1..1079 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:14 Download gff for
FMO02342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29495707..29495801 | 1..92 | 95 | -> | Plus |
| 3R | 29497000..29497324 | 93..417 | 100 | -> | Plus |
| 3R | 29497387..29498005 | 418..1027 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:55 Download gff for
FMO02342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25321429..25321523 | 1..92 | 95 | -> | Plus |
| arm_3R | 25322722..25323046 | 93..417 | 100 | -> | Plus |
| arm_3R | 25323109..25323727 | 418..1027 | 98 | -> | Plus |
