FMO02343.5prime Sequence
656 bp (656 high quality bases) assembled on 2008-05-14
> FMO02343.5prime
CAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGCTCCTCCTG
GTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGCAGCTGCAT
GCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGTTGTGCAAC
TGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGACCACCTAC
AAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCACGACGAAT
GCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAATGTGTGGTA
TAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGATGCCGACA
TTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACCATAACAGA
GCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTGCACAGTAA
CTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATGCCGATACA
TGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGTGCCTGCAT
GCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATGCCGCTGGC
GACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAAGCTTTCTA
GACCAT
FMO02343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Timp-RB | 1591 | CG6281-RB | 319..949 | 8..638 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10204763..10204991 | 450..222 | 1130 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10204517..10204708 | 638..447 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 10205250..10205383 | 141..8 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 10205092..10205179 | 228..141 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 378..350 | 109 | 86.2 | Minus |
FMO02343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:44 Download gff for
FMO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6281-RB | 296..933 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:59 Download gff for
FMO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Timp-RB | 315..952 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:20 Download gff for
FMO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Timp-RB | 315..952 | 1..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:20 Download gff for
FMO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10204513..10204708 | 447..642 | 98 | <- | Minus |
| 3R | 10204767..10204985 | 228..446 | 100 | <- | Minus |
| 3R | 10205093..10205178 | 142..227 | 100 | <- | Minus |
| 3R | 10205250..10205387 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:59 Download gff for
FMO02343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6030235..6030430 | 447..642 | 98 | <- | Minus |
| arm_3R | 6030489..6030707 | 228..446 | 100 | <- | Minus |
| arm_3R | 6030815..6030900 | 142..227 | 100 | <- | Minus |
| arm_3R | 6030972..6031109 | 1..141 | 97 | | Minus |
