FMO02344.5prime Sequence
1218 bp (1046 high quality bases) assembled on 2008-05-14
> FMO02344.5prime
CAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGTTCATGCAG
GCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGGGCTACGGA
TAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGGCGACGGTG
TGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGGCAGCCAGC
GTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAATCCCGTGCT
TAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAACAAAGTGT
GCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGGGTGACCTG
CAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTACGCCAATGT
GGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACACCAACATCG
ACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGGCGTTGGAG
CACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATCACCGCCAA
AAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGACGAAGAATC
AGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGAAGTTGGGC
GACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTCTATCCGCG
CATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCAGATGGTTT
CCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCTATGGTGCC
ATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGTGTCGTTGC
TGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGGTGCACGTC
ACACCTTCGCCGAGGCCGTGGGCAAGAACGTGCTAATCCCACTGCATGCT
GCTCTGCGGCGTGAAGCTGTGCGCCACATCACTGCCCACCTACGGCGAGA
TCATCCAGATGCATCAACAGGTGCTGAACGATGGCCAGGTGCGTACTAGA
TCTGGGCGAAATCGACAGCCAGACTTTACCGCGCCATCATCTGACAGTCC
GCTAGCTTTCTAGACATTCGTTGGGCGCGCGGCCAGGTAATGCTATCTAA
TCTAATCTAAATCCTAATCCCACTAGGCTAGAGGACTCCTGGCTACGATA
CATAGGTGCGCTGTGGGT
FMO02344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1625 | CG6439-RB | 350..1447 | 9..1091 | 5090 | 98.4 | Plus |
| CG6439-RA | 1861 | CG6439-RA | 152..1249 | 9..1091 | 5090 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22017340..22017941 | 891..290 | 2935 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22017979..22018098 | 309..190 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 22018619..22018717 | 196..98 | 480 | 99 | Minus |
| 3R | 32079331 | 3R | 22017053..22017219 | 1048..890 | 460 | 93.4 | Minus |
| 3R | 32079331 | 3R | 22018779..22018829 | 99..49 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 22018991..22019033 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:33 has no hits.
FMO02344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:46 Download gff for
FMO02344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 343..1462 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:20 Download gff for
FMO02344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 145..1264 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:13 Download gff for
FMO02344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 145..1264 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:13 Download gff for
FMO02344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22017341..22017922 | 309..890 | 100 | <- | Minus |
| 3R | 22017980..22018096 | 192..308 | 100 | <- | Minus |
| 3R | 22018624..22018716 | 99..191 | 100 | <- | Minus |
| 3R | 22018780..22018827 | 51..98 | 100 | <- | Minus |
| 3R | 22018992..22019039 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:20 Download gff for
FMO02344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17843063..17843644 | 309..890 | 100 | <- | Minus |
| arm_3R | 17843702..17843818 | 192..308 | 100 | <- | Minus |
| arm_3R | 17844346..17844438 | 99..191 | 100 | <- | Minus |
| arm_3R | 17844502..17844549 | 51..98 | 100 | <- | Minus |
| arm_3R | 17844714..17844761 | 1..50 | 92 | | Minus |
